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Topas 3

Manufactured by Bruker

Topas 3 is a software package developed by Bruker for X-ray powder diffraction data analysis. It provides tools for phase identification, quantitative analysis, and structure refinement of crystalline materials.

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6 protocols using topas 3

1

Phase Composition Analysis of Samples

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The phase composition of the samples after electrical conductivity measurements was analyzed by X-ray diffraction (XRD) and scanning electron microscopy (SEM) methods. Powder XRD measurements were done on a Bruker D8 diffractometer at ambient temperature using Ni filtered Cu Kα radiation (accelerating voltage 40 kV, electron current 40 mA). The diffractometer operates in the θ/2θ mode. The powder was fixed with petroleum jelly on a single-crystal silicon sample carrier which was rotated during the measurement. The detection unit was a Lynxeye strip detector. Indexing of the phases was supported by the Inorganic Crystal Structural Database (ICSD). Rietveld refinement of the XRD patterns was done with the Topas3® software provided by Bruker AXS.
The scanning electron microscope Zeiss Supra 55 VP was used for metallographic investigations. The excitation energy of the electron beam was 15–20 kV; backscattered electrons (BSE) were detected to visualize the surfaces of the samples. Pure Co was also used for energy calibration of the EDX detector signal. An acceleration voltage of 20 kV was applied. The chemical compositions obtained from EDX differ from the corresponding average value up to ± 1 at.%.
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2

Structural Characterization of AuRu3 Phases

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The Rietveld refinements were performed by using TOPAS3 software developed by Bruker AXS GmbH. The full width at half maximum of silicon (Standard Reference Material 640c) 111 diffraction peak is about 0.015° at 2θ = 10° which is an instrumental resolution function of the diffractometer. All XRD patterns were refined in 2θ range from 10 to 60° with 0.006° per step identical to the resolution of the beamline BL02B2, SPring-8. The XRD pattern of fcc-AuRu3 was well fitted by two components with space groups of Fm 3¯ m and P63/mmc. For hcp-AuRu3, the pattern was fitted by one component of P63/mmc.
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3

Small-Angle X-Ray Diffraction Analysis

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The small-angle X-ray diffraction
(SAXRD) measurements were performed with a Bruker Nanostar system
(Cu Kα radiation, parallel beam formed by cross-coupled Goebel
mirrors and 3-pinhole collimation system, area detector VANTEC 2000).
The temperature of the sample was controlled with a precision of 0.1
°C. Samples were prepared as a thin film on a Kapton tape substrate.
For all samples temperature-dependent measurements were performed
in the same manner—data were collected every 5 °C for
60 s. A quasi-monodomain sample was prepared by a mechanical shearing
at elevated temperatures (10 °C below the phase transition point)
on a heating table.
Fitting of the experimental diffractograms
and simulation of the patterns were done using Topas 3 software (Bruker).
Each procedure started with choosing the most probable symmetry of
the lattice. Then, the unit cell parameters, intensities of the (Pseudo-Voigt)
signals, and (1/x) background intensity were considered
as independently adjustable parameters.
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4

Structural and Compositional Analysis of Nanoparticles

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The crystal structure of the nanoparticles themselves and the phase composition of the samples after electrical conductivity measurements were analyzed on a Bruker D8 diffractometer at ambient temperature. The diffractometer operates in the θ/2θ mode using Ni-filtered CuKα radiation. Indexing of the phases was supported by the Inorganic Crystal Structural Database (ICSD). Rietveld refinement of the XRD patterns was done with the Topas3® software provided by Bruker AXS. The morphology of as-synthesized nanoparticles and samples was observed by a scanning electron microscope (SEM) Zeiss Supra 55 VP. The excitation energy of the electron beam was 15-20 kV; backscattered electrons (BSE) were detected in order to visualize the surfaces of the samples. The chemical analyses of the sample phases were performed using the energy dispersive x-ray (EDX) technique with four characteristic spectral lines of Ni, Cu (K–line) and Ag, Sn (L-line).
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5

X-Ray Diffraction Characterization of Thin Films

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XRD measurements at small angles were
performed with a Bruker Nanostar system (Cu K α radiation, parallel
beam formed by cross-coupled Goebel mirrors, and a 3-pinhole collimation
system, VANTEC 2000 area z detector). The temperature of the sample
was controlled with a precision of 0.1 K. Samples were prepared as
thin films on Kapton tape or silica wafer substrates. X-ray diffractograms
at wide angles were obtained with the Bruker D8 GADDS system (Cu Kα
line, Goebel mirror, point beam collimator, Vantec2000 area detector).
Experimental diffractograms were analyzed using Topas 3 software (Bruker).
Samples were prepared as thin films on Kapton tape or silica wafer
substrates.
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6

Structural Analysis of Au Nanorods

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For structural analysis, AuNR@MUDOL
precipitate was placed in a glass capillary for small angle X –
ray diffraction (SAXRD) analysis. Measurements were performed with
a Bruker Nanostar system (Cu Kα radiation, parallel beam formed
by cross-coupled Goebel mirrors, and a 3-pinhole collimation system,
VANTEC 2000 area z detector). Fitting of the obtained diffractogram
and simulation of the patterns was performed with Topas 3 software
(Bruker). Transmission electron microscopy analysis of AuNRs was performed
using TEM model JEM–1400 (JEOL, Japan), available in Nencki
Institute of Experimental Biology, Laboratory of electron microscopy.
Samples were prepared by drop-casting small aliquots of the as obtained
dispersions of AuNRs onto TEM grid, then left to dry under ambient
conditions. Spectroscopy in the UV–vis range studies was performed
using GENESYS 50 UV–vis spectrophotometer, available at University
of Warsaw.
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