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Sybr green qrt pcr kit

Manufactured by Bio-Rad
Sourced in United States

The SYBR Green qRT-PCR Kit is a reagent kit designed for quantitative reverse transcription polymerase chain reaction (qRT-PCR) analysis. The kit includes all necessary components to perform real-time gene expression analysis, including a SYBR Green fluorescent dye for detection of amplified DNA.

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5 protocols using sybr green qrt pcr kit

1

Quantitative Gene Expression Analysis in Maize

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Approximately, 0.1 g of the immature ear tissue (1.5–2 mm) was collected from each of the recombinant lines, parent lines and 105 inbred lines. Tissue samples of seedling roots, seedling leaves, internodes, mature leaves, 1-mm ears, 4-mm ears, and 2- and 4-cm tassels from B73, and SPMs, SMs, and floral meristems (FMs) from NILqknr6 and NILqKNR6 were collected for the extraction of total RNAs using the Pure Link Plant RNA Reagent (Ambion, Austin, TX, USA). Approximately, 1.0 μg of RNAs were reversely transcribed by the M-MLV reverse transcriptase (Life Technologies, Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions. Quantitative real-time PCR (qRT-PCR) was performed using the SYBR Green qRT-PCR Kit (Bio-Rad, Hercules, CA, USA) according to the manufacturer’s instructions with three biological replicates, each with three technical replicates. The maize ACTIN (Zm00001d010159) was used as the internal control. All reactions were carried out on the CFX96 Real-time system (Bio-Rad, Hercules, CA, USA). The relative expression of the gene was calculated by the 2−ΔΔCt method.
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2

RNA Extraction and qRT-PCR Analysis

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Total RNA of tissue and adipocytes were extracted with Trizol (Invitrogen, CA, USA). Reverse transcription of total RNA (1 μg) was performed with a high-capacity cDNA reverse transcription kit (Takara, Shiga, Japan). Amplification reactions were conducted using a SYBR Green qRT-PCR Kit (Bio-Rad Laboratories, CA, USA) with the Bio-RAD CFX 96 PCR system [25 (link)]. The amplification of each gene was verified by melting points. All primer sequences are listed in Table S1.
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3

Investigating DCLK1 and FOXD3 Regulation

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Antibodies used in these studies included: anti-β-actin (total; Sigma); anti-DCLK1 antibody (Abcam); anti-FOXD3 antibody (Abcam). Anti-DCLK1-S antibody was generated in our laboratory as described previously (9 ). The anti-DCLK1-S-Ab was specific for the S-isoform and did not cross-react with the L-isoform (9 ). Sepharose beads and all other chemical reagents were purchased from Sigma. cDNA Synthesis Master Mix was purchased from GeneDEPOT. SYBR green qRT-PCR kit was purchased from Bio-Rad. Promega GoTaq green Master Mix was used for PCR amplification, using a thermal cycler from Eppendorf. FOXD3 expression plasmid and vector controls were purchased from GeneCopoeia. Smart Pool of target-specific siRNA and nontargeting (control) siRNA were purchased from Dharmacon. Transfection reagent FuGENE6 was bought from Roche, and all primers used were synthesized by Sigma.
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4

Maize Gene Expression Analysis

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A total of approximately 1.0 g of seeds ground in liquid N2 per maize line was used for total RNA extraction with Ambion PureLink plant RNA reagent (Invitrogen, CA, USA). RNA integrity was analyzed by agarose gel electrophoresis and reverse transcribed with M-MLV reverse transcriptase (Invitrogen, CA, USA). The sequences of gene-specific primers used for quantitative real-time PCR (qPCR) are listed in Supplementary Table S2. qRT-PCR was performed using the SYBR Green qRT-PCR Kit (Bio-Rad, CA, USA) with three biological replicates. All reactions were conducted on a CFX96 real-time PCR system (Bio-Rad). The PCR conditions consisted of denaturing at 95°C for 1 min and 40 cycles of denaturing at 95°C for 15 s, followed by annealing and extension at 60°C for 30 s. The qRT-PCR data were analyzed using the 2−ΔΔCT relative quantification method.33 (link) Expression of GAPDH (glyceraldehyde-3-phosphate dehydrogenase gene) was measured as an internal control.
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5

Gene Expression Analysis in Maize Mutants

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To analyze gene expression, immature ears (~ 5 mm) were collected from the gif1-1 and wild-type plants. Total RNA was extracted from plant tissues using Ambion Pure Link Plant RNA Reagent (Life Technologies, USA) and reverse-transcribed with M-MLV reverse transcriptase (Life Technologies, USA) according to the manufacturer’s instructions. RT-qPCR was performed using a SYBR Green qRT-PCR kit (Bio-Rad, USA) according to the manufacturer’s instructions with three biological replicates; each replicate contained 10 individuals. Fold changes in RNA transcripts were calculated by the 2−ΔCt method with maize Actin gene (Zm00001d010159) as an internal control. All reactions were performed on a CFX96 real-time system (Bio-Rad). All primers used for RT-qPCR are listed in Supplemental Table 3.
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