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Fluorescence microscopy

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Fluorescence microscopy is a powerful imaging technique that utilizes the phenomenon of fluorescence to visualize and study biological samples. The core function of a fluorescence microscope is to excite fluorescent molecules within the sample, causing them to emit light at a different wavelength, which is then detected and captured by the microscope's imaging system.

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1 021 protocols using fluorescence microscopy

1

Measuring Intracellular Oxidative Stress

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Liver in situ O2·− production was determined by fluorescence probe DHE labeling. Frozen liver sections were prepared for immediate DHE staining. Thawed sections were incubated with 2 μM DHE at 37°C for 30 minutes (avoiding light). After washed 3 times by PBS, sections were immediately imaged using fluorescence microscopy (Olympus, Tokyo, Japan) and quantified by ImageJ software.
Intracellular O2·− levels were detected using the DHE staining. Cells were incubated with PBS diluted DHE (10 μM) at 37°C for 20 min (avoiding light), washed with PBS for 3 times, and then imaged using fluorescence microscopy (Olympus, Tokyo, Japan). Mitochondrial ROS in HepG2 cells was measured by MitoSOX Red at a concentration of 4 μM for 20 min at 37°C, imaged using fluorescence microscopy (Olympus, Tokyo, Japan), and quantified by ImageJ software.
DCFH-DA fluorescent probe was used to detect intracellular ROS generation. Cells were washed with PBS after incubation with DCFH-DA (10 μM) at 37°C for 30 min (avoiding light). Fluorescence intensity was measured at 530 nm with an excitation wavelength of 485 nm using a fluorescence microscope (Tecan, Crailsheim, Germany).
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2

Immunofluorescence Staining of Macrophages, Lung Cells, and Tissue

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Macrophages were treated as described above. Subsequently, the cells were fixed and blocked. The cells were incubated with rabbit anti-NF-κB p65 antibody overnight at 4 ℃, followed by subsequent incubation with fluorescently labeled secondary antibodies at 37 ℃ for 30 min. Finally, the nuclei were stained with 4’, 6-diamidino-2-phenylindole and observed using fluorescence microscopy (Olympus).
MRC-5 cells were cultured in the conditioned medium for 48 h. Then, they were subjected to immunofluorescence staining as mentioned above. The rabbit anti-α-SMA primary antibody was used for immunofluorescence staining.
The lung sections were deparaffinized, and the antigen was repaired with sodium citrate and sealed with 5% bovine serum albumin. The sections were incubated with rabbit anti-α-SMA antibody overnight at 4 ℃ and then with fluorescently labeled secondary antibodies at 37 ℃ for 30 min. The nuclei were stained with 4’, 6-diamidino-2-phenylindole and imaged by fluorescence microscopy (Olympus).
The primary antibodies used for the immunofluorescence co-localization of lung tissue sections were rabbit anti-CD11c and mouse anti-NLRP3. The images were captured via fluorescence microscopy (Olympus).
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Immunofluorescent Analysis of Spinal Cord Tissue

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The lumbosacral spinal cords were extracted and fixed as above, before dehydrating in 15% sucrose solution for 4 h, 20% sucrose solution for 10 h, and 30% sucrose solution overnight at 4 °C. Finally, the spinal cords were embedded in OCT and stored at −80 °C. For immunofluorescence assay, 5-μm thick sections from all of the groups were prepared, washed with TBST for 15 min, fixed with paraformaldehyde for 10 min, permeabilized with 0.3% Triton X-100 for 15 min, blocked with 10% normal donkey serum in TBST for 1.5 h, and incubated overnight at 4 °C with primary antibodies against NLRP3 (rat IgG, 1:150), ASC (rabbit IgG, 1:300), caspase-1 (mouse IgG, 1:80), cleaved IL-1β (rabbit IgG, 1:100), GSDMD (rabbit IgG, 1:400), and Iba-1 (goat IgG, 1:300). Following incubation, the sections were incubated with Alexa Fluor 488-, 594-, or 647-conjugated secondary antibody (1:400), before DAPI was used to stain the nuclei. Spinal cord tissues were visualized and captured with a confocal laser microscope (Nikon A1, Nikon, Tokyo, Japan) or fluorescence microscopy (Olympus, Tokyo, Japan) at the same parameters. Immunofluorescence images of cells were captured via fluorescence microscopy (Olympus, Tokyo, Japan). Immunofluorescence was analyzed by ImageJ (National Institutes of Health, Bethesda, MD) on six lumbar spinal cord sections for each littermate.
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Immunofluorescence Localization of GHRH and GH Receptors

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wt, His-, His-GHRH expressing HEK293 cells, and MIA PaCa-2, HT-29, LNCaP, PC3, PNT1A cells were seeded with a seeding density of 1 x 105 cells/well. Following the 48 h incubation period, cells were fixed (ice-cold methanol), permeabilized (0.1% Triton-X-100 in PBS), blocked (2% BSA in PBS) and probed with anti-rabbit anti-GHRH primary antibody (1:50), then incubated with anti-rabbit Alexa Fluor 488-conjugated Ig (1:250 dilution). Nuclear staining performed by 1 μg/mL DAPI and GHRH localization was observed fluorescence microscopy (Olympus, Japan). 1 x 105 cells/well MIA PaCa-2 cells were seeded with a seeding density, incubated with selected x-aptamers (500 nM) for 72 h. Cells were fixed (ice-cold methanol), permeabilized (0.1% Triton-X-100 in PBS), and blocked (2% BSA in PBS), probed with appropriate primary antibodies (anti-mouse anti-GH primary or anti-goat anti-GHRHR primary antibody), then incubated with anti-mouse Alexa Fluor 555-conjugated secondary antibody or FITC-conjugated anti-goat secondary antibody, respectively. Cellular GH or GHRHR expressions were visualized by fluorescence microscopy (Olympus, Japan).
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Quantitative Cytotoxicity Assay for CAR T-Cells

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For 2D culture, the mWasabi-luciferase-expressing target cancer cells (T) were treated with CM for 48 h. After removing the CM, the effector FRα-CAR effector T cells (E) were added at E:T ratios of 0.5:1, 1:1, and 2.5:1 for 24 h. Fluorescence images were taken under fluorescence microscopy (Olympus, Tokyo, Japan). The fluorescence intensity (FI) of target cells was detected (485/515 nm) using SynergyH1-Hybrid Reader (BioTek-Agilent, CA). The non-fluorescence-expressing cell lines were used as a blank control, while the target alone (control group) was used to normalize with all conditions regarded as no cytolysis (FI = 1). The formula of relative FI = (FI of test-blank)/ (FI of control-blank).
For 3D culture, the mWasabi-luciferase-expressing cells were seeded into an ultra-low attachment 96-well plate (CLS7007; Corning, MA) in 2.5% Matrigel® (354234, Corning). The spheroids were treated with CM on day 2 and cultured for 2 more days. Effector cells were labeled with CellTracker™ Orange CMRA (C34551; Invitrogen) before adding to target cells at E:T ratios of 2.5, 5:1, and 10:1, and then co-cultured for 4 d. Fluorescence images were detected by fluorescence microscopy (Olympus) and analyzed by CellSense Standard program version 1.15 (Olympus). The FI was analyzed by the ImageJ software 1.48v (http://rsbweb.nih.gov/ij/).
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Quantifying Cardiomyocyte Surface Area

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Cell size was measured following the method of Jeong et al. (2015) (link) with slight modifications described by Siti et al. (2021) (link). Cells were stained with a primary antibody against α-actinin (1:200 dilution; ab9465, Abcam, Cambridge, MA, United States) followed by an Alexa Fluor 488-conjugated anti-mouse secondary antibody (1:200 dilution; A-11059, Invitrogen, Waltham, MA, United States) and visualized via fluorescence microscopy (Olympus Optical, Tokyo, Japan). A blinded assessor quantified the cardiomyocytes’ surface areas (>60 cells) using ImageJ software (U. S. National Institutes of Health, Bethesda, MD, United States) and compared them to control cells. A minimum of three biological replicates was performed in triplicate (n = 3).
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7

EdU Staining for Cellular Proliferation

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The EdU Staining Proliferation kit (ab222421, Abcam) was applied to assess the proliferation of HT-3/DDP and HeLa/DDP cells, and all operations were performed strictly as per the instructions. Stably transfected cells (5 × 103 cells/well) were seeded into 96-well culture dishes and grown for 24 h. Then, 100 μL medium containing 20 μM EdU was supplemented into each well, and the cells were incubated at 37°C for 2 h. The number of EdU-positive cells was observed by fluorescence microscopy (Olympus Optical Co., Ltd., Tokyo, Japan) and counted.
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8

Apoptosis Visualization in PC12 Cells

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PC12 cells were harvested with PBS and fixed in 4% paraformaldehyde for 20 min at 25 °C and then washed with PBS before being exposed to Hoechst 33342 for 15 min in the dark. The apoptotic morphology was observed using fluorescence microscopy (Olympus Optical Co., Tokyo, Japan) at 400× magnification.
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9

Fibroblast Transduction and Proliferation

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The second generation of fibroblasts were transfected with Ad-EGFP-VEGF165 (Gi Kai Technologies, China), and post-transfection, the cells were incubated at 37 °C in an atmosphere containing 5% CO2. Three multiplicities of infection (MOI: 20, 50, and 100) were used, and cellular proliferation was assessed using the MTT assay. Following experimentation, the fibroblasts were transfected with the different MOIs of Ad-EGFP-VEGF165 for 24, 48, and 72 h, respectively, and the transfection efficiency was measured by fluorescence microscopy (Olympus Optical Co., Ltd., Tokyo, Japan).
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10

Macrophage and Angiogenesis Evaluation in Ischemic Muscle

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The hind limb blood flow was measured using laser Doppler perfusion imaging analyzer (Moor Instruments, Devon, UK) on days 0, 7, and 21. The gastrocnemius muscles obtained on day 7 were embedded in paraffin and used for histochemical analysis. The tissues were sectioned into 6 to 8 μm slices and incubated with rabbit monoclonal antibody (mAb) directed against CD68 (Abcam‐ab125212) and CD206 (Abcam‐ab64693) to locate M2 macrophages. Besides, Arginase‐1 (Arg‐1) were also stained by incubating with Rabbit mAb against Arg‐1 (Abcam‐ab91279) to detect the expression of Arg‐1 in vivo. Moreover, the ischemic muscle of mice (seven per group) was obtained on day 21 and sectioned into slices as disposed above. Then, tissue slices were incubated with Rabbit mAb against CD31 (Abcam‐ab28364) to identity vascular density. In addition, H&E staining was also performed to evaluate the degree of muscle degeneration and necrosis. The stained sections were imaged under Olympus fluorescence microscopy. The average count of three fields was calculated and each specimen was analyzed with three slices.
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