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829 protocols using ripa buffer

1

Protein Expression Analysis in Retinal Cells

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Total protein was extracted from cells or retina tissues utilizing RIPA buffer (Solarbio, Beijing, China). RIPA buffer (Solarbio, Beijing, China) was used to lyse cells or retina tissues. The protein concentration was determined using the BCA protein assay kit (Pierce, Appleton, WI, USA). Then, protein was separated with sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gel, followed by transference onto polyvinylidene difluoride (PVDF; EMD Millipore, Burlington, MA, USA) membranes. The membranes were blocked with 5% skim milk for 1 h. Then, the membranes were incubated with primary antibodies including anti-p53 (1:500, ab131442; Abcam, Waltham, MA, USA), anti-Bcl-2 (1:1,000, ab182858; Abcam, Waltham, MA, USA), anti-Bax (1:1,000, ab32503; Abcam, Waltham, MA, USA), anti-Cleaved-Caspase-3 (1:500, 33199M; BSM, Shanghai, China) and anti-β-actin (1:2,000, 20536-1-AP; Proteintech, Wuhan, China) overnight at 4 °C, followed by secondary antibodies (1:6,000, ZB-5301; ZSGB-BIO, Beijing, China) for 30 min at room temperature. The proteins were visualized using an ECL kit (KeyGen Biotech Co., Ltd., Jiangsu, China). β-actin was used as an internal control. The expression of protein was measured using ImageJ software (National Institutes of Health, Bethesda, MD, USA).
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2

Protein Extraction from Ovarian Cancer Tissue

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Total protein was extracted from tumor tissue using radio-immunoprecipitation assay (RIPA) buffer (Solarbio Biotech Corp., Beijing, China) following the manufacturer instructions. Briefly, ovarian cancer tissues were lysed for use in antibody array analysis in RIPA buffer containing 1% phenylmethylsulfonyl fluoride (Solarbio Biotech Corp.), and homogenized using a microtissue grinder (Kimble Chase, Thailand). The supernatants were collected after centrifugation at 14,000 g and 4°C for 15 min. The protein concentration was determined using a bicinchoninic acid assay (Solarbio Biotech Corp.).
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3

Protein Extraction from Tissue and Cells

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After thawing, the tissues were washed twice with deionized water to remove blood contamination on the surface. Then, samples were minced with scissors on ice and homogenized in RIPA buffer (Solarbio, R0010) containing 1% phenylmethylsulfonyl fluoride (PMSF) at a concentration of 10 μL/mg. Then, the homogenates were lysed at 4 ℃ for 30 min and centrifuged at 12,000g for 30 min at 4 ℃. For cell protein extraction, the cells were lysed using 100 μL of RIPA buffer (Solarbio, R0010) containing 1% PMSF after treatment for 24 h in 6-well plates and then centrifuged at 12,000g for 30 min at 4 ℃. Supernatants were collected as protein samples and stored at −80 ℃ until use.
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4

Whole-Cell Protein Extraction and Western Blotting

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To extract whole‐cell proteins, cells were lysed in 1 × RIPA buffer (Solarbio, Beijing, China) containing a cocktail solution of protease inhibitors (Sangon Biotech) on ice for 30 minutes and then centrifuged (12 000 × g for 10 minutes at 4°C). Subsequently, the Bradford method was used to normalize protein concentrations, and a representative Western blotting protocol was adopted. In brief, 20 μg of protein per channel was separated through 10% SDS‐PAGE and then transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, Billerica, MA, USA). After blocking with a blocking solution (5% skim milk in Tris‐buffered saline with 0.1% Tween‐20, TBS‐T) for 1 hour, the membranes were incubated with the primary antibodies (including rabbit anti‐human NR5A1: ab168380, GATA4: ab134057, DMRT1: ab126741, GAPDH: ab37168, Abcam, Cambridge, UK, at 1:2000; and rabbit anti‐human CYP17A1: orb213833, HSD3B1: orb5478, STAR:orb129747, CYP11A1: orb213832, Biorbyt, San Francisco, CA, USA, at 1:1000) overnight at 4°C. Next, the membranes were incubated with the goat anti‐rabbit secondary antibody (ab150079, Abcam, 1:10000) for 1 hour at RT in the dark, and specific bands were detected using a two‐colour Infrared Laser Imaging System (LI‐COR Odyssey, USA).
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5

Protein extraction and Western blotting

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Cell samples were collected, and the protein was extracted with 1× RIPA buffer (Solarbio, China) and phenylmethylsulfonyl fluoride (PMSF) (1:1,000). Colon samples were weighed and homogenized in 1× RIPA buffer (10 μl/μg tissue) with PMSF (1:1,000) using the tissue breaker machine. The mixtures were centrifuged at 4°C for 10 min at 15,000 × g, and the supernatant was collected. Protein concentration was measured with a bicinchoninic acid (BCA) protein assay kit (Solarbio). Briefly, proteins were separated by 12% SDS polyacrylamide gels and then transferred onto polyvinylidene difluoride (PVDF) membranes (Bio-Rad Laboratories). The membrane was blocked with 5% skimmed milk for 1 h and incubated with antibody NRLP3 (ab214185; Abcam) overnight at 4°C and then incubated with second antibodies labeled with horseradish peroxidase (HRP) at room temperature for 1 h. Bands were visualized using an ECL kit (Fdbio Science, China), and band intensities were normalized by the results of β-actin.
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6

Western Blot Analysis of Cardiac Proteins

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Briefly, H9c2 cells and cardiac tissue were extracted by 1× RIPA buffer (Solarbio Life Sciences, Beijing, China) containing protease and phosphatase inhibitors. The proteins were loaded to 10% SDS-polyacrylamide gels for electrophoresis and transferred to a polyvinylidene difluoride (PVDF) membrane. After blotting in 5% non-fat milk for 1.0 h, the membranes were incubated with specific primary antibodies (Bcl2, Caspase-3, Bax, Baclin-1, LC3II, BIP, GAPDH, β-tubulin, β-actin) overnight and goat anti-rabbit or goat anti-mouse IgG-HRP-conjugated secondary antibodies for 1 h at room temperature (RT). After washing with 1× TBST, the bands were detected with enhanced chemiluminescence (ECL) detection reagents from Absin Bioscience Inc. (Shanghai, China).
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7

Immunoblot Analysis of Cell Signaling

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For immunoblot analyses, 1.0 × 107 transfected cells were lysed (0°C; 30 min) in 100–200 μL of 1× RIPA buffer (Solarbio) containing a Phosphatase & Protease inhibitor cocktail (Solarbio). Approximately 20 μg of protein samples was loaded on SDS polyacrylamide gels and subjected to electrophoresis prior to transfer to nitrocellulose membranes (Bio-Rad, Sundbyberg, Sweden). Probing was conducted using specific antibodies to Flag (mouse monoclonal, Cat#80010-1-RR, 1:1000, Proteintech, Wuhan, China), Src (mouse monoclonal, Cat#60315-1-Ig, 1:20000, Proteintech), phosphorylated-Src (p-Src, Tyr416, rabbit monoclonal, Cat#59548S, 1:1000, Cell Signaling Technology, Beverly, MA, USA), mTOR (mouse monoclonal, Cat#66888-1-Ig, 1:10000, Proteintech), p-mTOR (Ser2448, mouse monoclonal, Cat#67778-1-Ig, 1:5000, Proteintech), and GAPDH (mouse monoclonal, Cat#60004-1-lg, 1:50000, Proteintech). The goat anti-mouse or anti-rabbit IgG coupled by HRP (Cat#SA00001-1 or Cat#SA00001-2, 1:5000, Proteintech) served as the secondary antibody. After visualization with enhanced chemiluminescence (Yeasen, Shanghai, China), immunoreactivity signals were analyzed using the Chemidoc-XRS Gel System with Quantity One software (Bio-Rad).
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8

Western Blot Analysis of Aorta Proteins

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Total proteins were isolated from snap-frozen aorta samples using RIPA buffer containing protease inhibitors (Solarbio Science Technology Co, China). The lysates (40–50 μg) were separated by electrophoresis in 8–12% SDS-PAGE gels, transferred to the polyvinylidene difluoride (PVDF) membranes (Bio-Rad), and incubated with the primary antibodies against β2i (Abcam, London, UK), β5i (Abcam), p-eNOS1177 (Cell Signaling Technologies, Boston, MA), eNOS (Cell Signaling Technologies), and GAPDH (Proteintech Group Inc, Rosemont, IL). The horseradish peroxidase-conjugated anti-mouse or anti-rabbit IgG were purchased from Cell Signaling Technologies. All blots were analyzed by the Image J software and normalized to GAPDH.
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9

Western Blot Protein Analysis Protocol

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Proteins were extracted and analyzed by general Western blot protocol. Just for a brief period, proteins were extracted by RIPA buffer (R0010, Solarbio, Beijing, China) with 12,000 r/min centrifugation for 5 min and subjected to SDS-PAGE and transferred to 0.45 µm PVDF membranes (Millipore, Billerica, MA, USA). Membranes were blocked for 2 h at room temperature with 5% BSA, then incubated overnight at 4 °C with appropriate dilutions of primary antibodies (Abcam, Cambridge, UK), five washes with TBST, having 5 min each. This was then followed by incubation of membrane with conjugated secondary antibody (Abcam, Cambridge, UK) for 1 h at room temperature, and three washes with TBST at 5 min each. Finally,
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10

Western Blot Analysis of Lung Cell Proteins

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Tissues and A549 cells were harvested, lysed in RIPA buffer (Solarbio, Beijing, China) containing protease inhibitor PMSF (Solarbio). Protein concentrations were determined using a BCA kit (Thermo Fisher Scientific, USA). Proteins were separated on 8% or 12% SDS-PAGE Gels. Separated proteins were transferred onto polyvinylidene difluoride (PDVF) membranes, which were blocked with 5% non-fat milk in TBST and incubated with the primary antibodies overnight at 4°C. Subsequently, membranes were incubated with appropriate secondary HRP-linked antibodies. Proteins were visualized by enhanced chemiluminescence (Millipore, Burlington, MA, USA). Images were obtained using ChemiDoc XRS (Bio-Rad). The relative band intensity was quantified using the Image Lab Analyzer software (Bio-Rad, Hercules, CA). The antibodies used in the present research were as follows: rabbit anti-β-Tubulin antibody and rabbit anti-GAPDH antibody (1:2000, Servicebio, Wuhan, China); rabbit anti-α-SMA antibody (1:1000, SAB, Maryland, USA); rabbit anti-sEH antibody (1:5000, Abcam, USA); rabbit anti-COX-2 antibody (1:1000, Servicebio); rabbit anti-Collagen Type I antibody (1:1000, Proteintech, Rosemont, USA); rabbit anti-Collagen Type III antibody (1:1000, Proteintech); rabbit anti-SFTPC antibody (1:1000, Abcam); rabbit anti-p53 antibody (1:3000, Proteintech).
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