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210 protocols using il 13

1

Differentiation of Macrophage Subsets

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Buffy coats from healthy blood donors were obtained from the division of Clinical Immunology and Transfusion Medicine, Uppsala University Hospital (Uppsala, Sweden), and monocytes were isolated by gradient centrifugation and allowed to differentiate into macrophages with macrophage colony-stimulating factor (M-CSF) treatment for 6 days, as described previously (25 (link)). After macrophage differentiation, the macrophages were further differentiated into M1 macrophages through the addition of 100 ng/ml LPS (Sigma-Aldrich, St. Louis, MO, USA) plus 20 ng/ml IFN-γ for 48 h or M2 macrophages through the addition of 20 ng/ml IL-4 plus 20 ng/ml IL-13 (all from R&D Systems, Minneapolis, MN, USA) for 48 h. The differentiated M1 and M2 macrophages [the phenotypes were characterized as described previously (25 (link))] were washed twice with PBS and were cultured for another 48 h in RPMI 5% FCS (without either IFN-γ/LPS or IL-4/IL-13) to generate M1 and M2 CM. The collected CM was centrifuged to remove cell debris and stored in aliquots at −20°C.
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2

Modulation of miR-31 and miR-155 in HT-29 cells

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HT-29 cells were transfected with 100 nM Pre-miR™ miR precursors (Negative control#1, miR-31, miR-155 or a combination of 50 nM miR-31 + 50 nM miR-155, Thermo Fisher Scientific) using Interferin (Polyplus, New York, NY, USA) following manufacturer’s instructions. For IL-13 stimulation experiments, cells were stimulated 24 h post-transfection with 100 ng/mL IL-13 (R&D Systems, Minneapolis, MN, USA) and harvested 24 h later.
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3

Cytokine-induced Goblet Cell Differentiation

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For the cytokine studies, the media was changed every 2 days. For the IL‐13 experiments, 20 ng/ml IL‐13 (R&D Systems) or DMSO vehicle was added to the basolateral compartment of differentiated epithelia, then 20 µl of the basolateral solution was added to the apical surface and experiments were performed 21 days after initial treatment. 20 ng/ml IL‐13 is sufficient to increase goblet cell abundance in many laboratories (Laoukili et al. 2001; Atherton et al. 2003; Zhen et al. 2007; Kanoh et al. 2011; Thavagnanam et al. 2011; Dickinson et al. 2016; Pezzulo et al. 2019). For IL‐17/TNFα experiments, 20 ng/ml IL‐17 (R&D Systems) and 10 ng/ml TNFα (R&D Systems) or DMSO was added to the basolateral media and experiments were performed 2 days later based on preliminary dose–response studies and previous reports (Kao et al. 2004; McAllister et al. 2005; Kreindler et al. 2009; Choy et al. 2015; Lehmann et al. 2018; Pezzulo et al. 2019).
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4

Cytokine-Induced Airway Epithelial Remodeling

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For cytokine studies, media was changed every 2 days. For IL-13 experiments, 20 ng/mL IL-13 (R&D Systems) or DMSO vehicle was added to the basolateral compartment of differentiated epithelia, then 20 μL of the basolateral solution was added to the apical surface and experiments were performed 21 days after initial treatment. 20 ng/mL IL-13 is sufficient to increase goblet cell abundance in many laboratories (Laoukili et al., 2001 (link); Atherton et al., 2003 (link); Zhen et al., 2007 (link); Kanoh et al., 2011 (link); Thavagnanam et al., 2011 (link); Dickinson et al., 2016 (link); Pezzulo et al., 2019 (link)). For IL-1 7/TNFα experiments, 20 ng/mL IL-17 (R&D Systems) and 10 ng/mL TNFα (R&D Systems) or DMSO was added to the basolateral media and experiments were performed 2 days later based on preliminary dose-response studies and previous reports (Kao et al., 2004 (link); McAllister et al., 2005 (link); Kreindler et al., 2009 (link); Choy et al., 2015 ; Lehmann et al., 2018 (link); Pezzulo et al., 2019 (link)).
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5

Regulation of TSP1 expression in B cells

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To increase the expression of TSP1, B cells (106 cells/ml) were stimulated with lipopolysaccharide (LPS; Sigma–Aldrich) at 1 µg/ml in the culture for 48 h. To test the effects of IL-13 on suppression of TSP1 in B cells, B cells were cultured in the presence of both LPS and IL-13 (200 ng/ml; R&D Systems) in the culture for 48 h. To test the role of miR-98 in the IL-13-suppressed TSP1 expression in B cells, miR-98-deficient B cells and wild B cells were exposed to LPS and IL-13 in the culture for 48 h. To avoid B-cell apoptosis, anti-CD40 mAb (20 ng/ml; Santa Cruz Biotechnology) was added to the culture.
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6

Eosinophil-Myofibroblast Co-Culture Protocol

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Intestinal myofibroblasts (18Co-ATCC) were cultured as previously described (4 (link)) in the presence of freshly isolated eosinophils at a ratio of 1:1. Following 24 or 48 hours co-culture, eosinophils were completely removed and 18Co cells harvested for total cell RNA isolation with RNeasy Mini Kits (Qiagen, Valencia, CA). For IL-13 stimulation experiments 18Co cells were co-cultured with eosinophils for 48 hours, eosinophils were removed and 18Co cells were returned to culture in the presence of IL-13 (100 ng/ml, R&D Systems, Minneapolis, MN) for an additional 72 hours, at which point 18Co’s were harvested for total cell RNA isolation with RNeasy Mini Kits (Qiagen, Valencia, CA).
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7

Macrophage Differentiation and Visualization

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THP-1 cells were purchased by the Korean Cell Line Bank (KCLB, Seoul, Korea) (KCLB No. 40202) and they were grown in T75 flask in RPMI 1640 Medium (with 2.5 g/mL glucose, Gibco), 10% Heat-Inactivated Fetal Bovine Serum (Gibco), 1% Penicillin Streptomycin (WELGENE), 0.05% Sodium Pyruvate (Gibco) and 25 μM 2-Mercaptoethanol (Gibco). THP-1 cells were differentiated into macrophages by 100 nM of phorbol-12-myristate-13-acetate (Sigma-Aldrich), and differentiated into M1 by adding LPS (100 ng/mL, Sigma-Aldrich) and IFN-γ (20 ng/mL, R&D Systems) for 24 h, and M2 cells with M-CSF (20 ng/mL, Peprotech), IL-4 (40 ng/mL, R&D Systems), and IL-13 (40 ng/mL, R&D Systems) for 4 days. Primary peritoneal macrophages were collected from peritoneal cavity. The harvested cells were differentiated into M1 macrophages by LPS (100 ng/mL, Sigma-Aldrich) and IFN-γ (20 ng/mL, R&D Systems) and M2 cells with the addition of IL-4 (40 ng/mL, R&D Systems), and IL-13 (40 ng/mL, R&D Systems) for 24 h. The M0, M1, and M2 macrophages from THP-1 and mouse primary cells were stained with 0.5 μM of CDr17 for 30 min.
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8

Differentiation of Human Nasal Epithelial Cells

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The hNECs were differentiated from human nasal epithelial stem/progenitor cells (hNESPCs) isolated from IT of healthy subjects (n = 9). The hNESPCs were transferred to an ALI system to form a pseudostratified layer within 4 weeks. Methods for culturing hNECs were described in previous paper (Li et al., 2014 (link)). IL-13 (10 ng/ml, R&D System, Minneapolis, MN, United States) was added in the medium on the first of ALI and medium with IL-13 were replenished every 2 days for 21 days until they were fully differentiated.
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9

Quantification of Allergy Biomarkers

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Concentrations of eotaxin, IL-4, IL-5 (BD Pharmingen, CA, USA), RANTES (RayBiotech Inc., GA), and IL-13 (R&D Systems, Minneapolis, MN) in BALF were quantified using sandwich EIA kits according to the manufacturer's instructions. Similarly, the serum level of total IgE was quantified with a commercially available EIA kit (BD Pharmingen, CA, USA).
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10

Quantitative RT-PCR and ELISA Analysis

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Quantitative RT-PCR was performed as previously described (27 (link)). Expression of cytokine genes was calculated relative to GAPDH transcripts. ELISAs for mMCP-1 (Affymetrix), IL-4, IL-5 (BD Biosciences), IL-13 (R&D Systems), TNF-α, IL-6, IFN-γ (Biolegend) and OVA-IgE were performed according to manufacturers’ protocols as previously described (6 (link), 27 (link)).
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