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11 protocols using ab107595

1

Xenograft Neovascularization Analysis Protocol

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The subcutaneous xenografts from all mouse groups were extracted in the sixth week following transplantation, and the gross morphology and texture of the xenografts were visually assessed. The xenografts were preserved with 4% paraformaldehyde at 4°C overnight. HE and immunohistochemical staining (CD31, VEGFA, CD105) were performed according to the kit guidelines. HE staining was used to determine the existence of a hydrogel within the xenograft, the absence of the hydrogel grid structure, and the presence of tumor cells within the hydrogel. Immunohistochemical staining for CD31 (anti-human/mouse CD31 (ab28364), Abcam) and VEGFA (anti-human/mouse VEGFA (ab52917), Abcam) was employed to assess neovascularization in the xenograft. CD105 (anti-human CD105 (ab114052) and anti-human/mouse CD105 (ab107595), both from Abcam) were used to evaluate the vascular component of the xenografts. In this research, the source of neovascularization in the xenografts was examined by double immunofluorescence staining for vWF (rabbit anti-human vWF (ab154193), Abcam) and glial fibrillary acidic protein (GFAP) (mouse anti-human GFAP (MAB2594), R&D Biosystems), following the manufacturer’s guidance.
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2

Characterization of Lung Cell Markers

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Cells were washed with MACS flow buffer (MACS, 130-091-222) and permeabilized with BD Cytofix/Cytoperm (BD, 554714) prior to incubation with antibodies. Cells were labeled for antibodies against CD90 (Abcam, ab3105; Abcam, ab124527; Abcam, ab23894; BD, 555595), CD105 (Abcam, ab107595; Abcam, ab2529; Abcam, ab11414; R&D Systems, Fab10971p), Pro-SPC (Bioss, bs 10067R; Abcam, ab40879), CCSP (Abcam, ab171957), Epcam (Abcam, ab71916, Abcam, ab168828; Life Technologies, a15755), and Aqp5 (Abcam, ab78486; Abcam, ab85905) and detected by Alexa Fluor 488 (Abcam, ab150117, ab150077) or fluorescein isothiocyanate (FitC) (Abcam, ab6840) secondary antibodies. Both unstained and isotype controls (Abcam, ab18419; BD, 559320; Abcam, ab125938) were utilized as controls. Human adipose-derived mesenchymal stem cells (AD-MSCs) were obtained from Lonza. Flow Cytometry was performed on the CytoFlex (Beckman Coulter, Indianapolis, IN) and analyzed using FCS Express (De Novo Software, Glendale, CA) or CytExpert ((Beckman Coulter, Indianapolis, IN).
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3

Quantifying Tumor Metastasis and EMT

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Upon euthanasia, primary tumors and lungs were harvested and placed into Bouin's fixative. After quantifying metastases, lungs were rinsed 3 times in PBS and then placed into a neutral-buffered formalin solution. Primary tumors were fixed directly in 10% neutral-buffered formalin. Fixed tissues were processed, paraffin-embedded, and sectioned (5 µm) before staining with hematoxylin (Thermo Fisher Scientific, NC9964763) and eosin-Y (Thermo Scientific, 71304) using standard methods. Immunohistochemistry was performed on adjoining sections for the angiogenesis markers CD31 (Abcam, ab28364 at 1:50) and CD105 (Abcam, ab107595 at 1:100), and for the epithelial–mesenchymal transition (EMT) markers E-Cadherin (Cell Signaling Technology, 3195 at 1:400), Vimentin (Cell Signaling Technology, 5741 at 1:100), and SNAIL (Abcam, ab53519 at 1:75).
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4

Investigating BMP Signaling Pathway

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Bmp4 (ab39973; Abcam, Cambridge, UK), Bmp9 (ab35088; Abcam, Cambridge,
UK), Alk2 (ab60157; Abcam, Cambridge, UK) and Eng (ab107595; Abcam, Cambridge,
UK).
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5

Characterization of Musculoskeletal Cell Markers

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Primary antibodies used were specific for Collagen type I (Abcam, ab34710, 1:100 dilution), Collagen type II (Millipore, MAB8887, 1:100 dilution), murine CD200 (Abcam, ab33734, 1:100 dilution), Nestin (Abcam, ab11306, 1:200 dilution), Gremlin 1 (Abcam, ab189267, 1:50 dilution), COMP (Abcam, ab74524, 1:50 dilution), Aggrecan (Abcam, ab3778, 1:100 dilution), Thy1.2 (Invitrogen, cat no. 14-0902-82, 1:50 dilution, 6C3 (Invitrogen, cat no. 14-5891-82 (1:50 dilution), CD105 (Abcam, ab107595, 1:100 dilution), Runx2 (Abcam, ab76956, 1:200 dilution), Alpl (Abcam, ab108337, 1:100 dilution), Osteocalcin (Abcam, ab93876, 1:100 dilution), CD146 (Abcam, ab75769, 1:100 dilution), CD140α (Abcam, ab96569, 1:100 dilution), CD200 (Abcam, ab203887, 1:200 dilution), Tartrate Resistant Acid Phosphatase (TRAP) (Abcam, ab185716, 1:50 dilution), and Cathepsin K (Abcam, ab19027, 1:200 dilution).
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6

Evaluating Oncolytic Measles Virus Therapy in Tumor-Bearing Mice

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Tumor bearing mice (n = 3) were randomly divided into three groups and treated with two intravenous injections of PBS, 1.5×106 TCID50 of MV-GFP or MV-CD46-muPA. Tumor samples were collected and frozen, and cryostat sections were fixed in cold acetone for 10 min and endogenous peroxidase activity were quenched with 0.3% H2O2 for 10 min. The slides were washed in PBS and incubated with anti-muPAR antibody (R&D Systems, #AF534, Minneapolis, MN) for 30 min at 37°C. After washing in PBS, the slides were developed with Anti-Goat HRP-DAB Cell & Tissue Staining Kit (brown; R&D Systems, #CTS008) and counterstained with hematoxylin (blue) according to the manufacturer’s instructions.
Cryostat sections were fixed in cold acetone for 10 min. The slides were washed in PBS and stained with anti-MV-nucleoprotein-FITC antibody (Chemicon International, #MAB8906F, Temecula, CA), anti-Ki67 antibody-FITC (Thermo Fisher Scientific, #11-5698-82, Waltham, MA), anti-CD140a antibody (Cell signaling, #3174), anti-CD31 antibody (Abcam, #ab28364) or anti-CD105 antibody ( Abcam, #ab107595) with Alexa fluor 488 anti-rabbit IgG. Slides were mounted with anti-fade mounting medium after three PBS washes and analyzed by fluorescent microscopy.
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7

Characterization of Musculoskeletal Cell Markers

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Primary antibodies used were specific for Collagen type I (Abcam, ab34710, 1:100 dilution), Collagen type II (Millipore, MAB8887, 1:100 dilution), murine CD200 (Abcam, ab33734, 1:100 dilution), Nestin (Abcam, ab11306, 1:200 dilution), Gremlin 1 (Abcam, ab189267, 1:50 dilution), COMP (Abcam, ab74524, 1:50 dilution), Aggrecan (Abcam, ab3778, 1:100 dilution), Thy1.2 (Invitrogen, cat no. 14-0902-82, 1:50 dilution, 6C3 (Invitrogen, cat no. 14-5891-82 (1:50 dilution), CD105 (Abcam, ab107595, 1:100 dilution), Runx2 (Abcam, ab76956, 1:200 dilution), Alpl (Abcam, ab108337, 1:100 dilution), Osteocalcin (Abcam, ab93876, 1:100 dilution), CD146 (Abcam, ab75769, 1:100 dilution), CD140α (Abcam, ab96569, 1:100 dilution), CD200 (Abcam, ab203887, 1:200 dilution), Tartrate Resistant Acid Phosphatase (TRAP) (Abcam, ab185716, 1:50 dilution), and Cathepsin K (Abcam, ab19027, 1:200 dilution).
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8

Xenograft Tumor Characterization Protocol

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All subcutaneous xenograft tumors were obtained at 6 weeks after transplantation and fixed with 4% paraformaldehyde at 4°C overnight. Samples were stained with hematoxylin and eosin according to the instructions to analyze the presence of hydrogel and glioma cells within xenograft tumors. Immunohistochemical staining was performed with primary antibodies (anti-human/mouse CD31 (ab28364), anti-human CD105 (ab114052), anti-human/mouse CD105 (ab107595), all form abcam) following the manufacturer’s instructions. Immunofluorescence staining was carried out using primary antibodies (rabbit anti-human vWF (ab154193) form abcam, mouse anti-human GFAP (MAB2594) form R&D Biosystems) according to the protocol. In this study, CD31 was used to detect the neovascularization within xenograft tumors and CD105 was used to evaluate the composition of neovascularization. Particularly, vWF/GFAP double immunofluorescence staining was used to evaluate the origin of neovascularization.
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9

Immunophenotypic Analysis of Cell Cultures

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Immunophenotyping of the cells for surface and intracellular markers was performed upon reaching 80% confluence of the cultures. The harvested cells were centrifuged at 800g for 10 min, the supernatant was discarded, and then the cells were fixed in 2% paraformaldehyde for 15 min at room temperature (RT), diluted with 5 ml of PBS, and centrifuged at 1,500g for 10 min. The pellet was then resuspended in 1 ml of PBS. For immunostaining, 1 × 105 fixed cells were incubated in 100 μl of Rinsing Solution (Miltenyi Biotec, Somerville, MA, USA) with primary antibodies to CD90 (ab225, 1/100, Abcam), CD45 (130-107-846, clone REA504, 1/20, Miltenyi Biotec, Somerville, MA, USA), CD105 (ab107595, 1/100, Abcam), and CD34 (PAB18289, 1/100, Abnova) at RT for 1 h. Subsequently, the cells were incubated with secondary antibodies: anti-mouse Ig-FITC (ab6785, 1/500, Abcam) or anti-rabbit Ig-PE (sc-3739, 1/100, Santa Cruz) at RT for 1 h in the dark. After the incubation, the cells were washed in PBS, resuspended in 0.5 ml PBS, and then transferred to fresh tubes for analysis using a FACScan flow cytometer (Becton Dickinson, Franklin Lakes, NJ, USA) with CellQuest software.
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10

Comprehensive Immunohistochemistry and Immunofluorescence Analysis

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Immunohistochemistry and immunofluorescence analyses were performed according to the standard protocol. We incubated the sections with primary antibodies against: type 2 collagen (Col 2) (ab34712, abcam, UK), CD105 (ab107595, abcam, UK, or ab11414, abcam, UK), proliferating cell nuclear antigen (PCNA) (ab29, abcam, UK), Ki67 (ab15580, abcam, UK), SOX9 (ab185966, abcam, UK), or P53 (ab131442, abcam, UK) overnight at 4 °C. The details of the primary antibodies were listed in the supplementary materials (see Additional file 5). For immunohistochemistry analysis, we used the MaxvisionTM2 HRP-Polymer anti-Mouse/Rabbit IHC Kit (KIT-5920, Maixin, China) to perform DAB staining and the sections were counterstained with hematoxylin. For immunofluorescence analysis, the sections were incubated with Alexa Fluor 594-preadsorbed goat anti-rabbit IgG (1:300, ab150084, abcam, UK) and Alexa Fluor 488-preadsorbed goat anti-mouse IgG (1:200, ab150117, abcam, UK) for 1 h at room temperature. The DAPI Fluoromount-G (0100-20, SouthernBiotech, USA) was used to mount the sections. The staining intensity of the immunohistochemical images were quantified by Image J (NIH, Bethesda, USA). As for immunofluorescence analysis, the double staining-positive cells (yellow) were counted. Three fields were randomly selected per section. Quantitative analysis was performed by three independent evaluators.
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