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38 protocols using slc7a11

1

Protein Expression Analysis of SLC7A11, TFR1, and GPX4

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Primary antibodies (SLC7A11, TFR1, and GPX4) were obtained from Abcam (CA, USA) and used to test the levels of SLC7A11, TFR1, and GPX4 in the cells. Briefly, proteins were extracted from cells and tested using a BCA kit (Beyotime). Next, 10% SDS-PAGE was performed, and the proteins were transferred onto PVDF membranes. The membranes were blocked with 5% BSA for 2 h and then incubated with primary antibodies for 12 h at 4°C. The membranes were then incubated with the secondary antibody for 1  h. Finally, the chemiluminescence kit was utilized to visualize the proteins, and the bands were photographed and analyzed using ImageJ, with GAPDH as the internal parameter [24 (link)].
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2

Western Blot Analysis of SLC7A11 Expression

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HGC27 and SGC7901 cells at logarithmic growth phase were digested and placed in six-well plates at a density of 5 × 105 cells per well, and transfected with miR-489-3p mimics, miR-489-3p inhibitor or NC. The cells were lyzed by RIPA lysis buffer (Sigma, China) added with the cocktail of protease inhibitors (Sigma). An equivalent amount of protein (30 μg) was separated in an SDS-PAGE and shifted onto the polyvinylidene fluoride (PVDF) membranes. The membranes were soaked in a fast-blocking reagent (Thermo) for 15 min, followed by incubation with primary antibodies against SLC7A11 (1: 1,000, Abcam, United States) and β-actin (1: 1,000, Abcam) at 4°C with gentle rocking all night. Next day, wash the membranes three times in TBST and incubate them in appropriate secondary antibodies (1: 1,000, Abcam). The membranes were visualized by a Enhanced chemiluminescence (ECL) reagent, and captured in a gel imaging system (BD Biosciences, United States).
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3

Testicular Protein Expression Analysis

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Protein extraction was performed on frozen testicular tissue by the Trizol precipitation method. Protein concentrations were evaluated using the Bradford’s test (Bio-Rad; USA). Equal amounts of each protein (30 μg) were loaded onto 12% SDS polyacrylamide gels (PAGE) which were then transferred to PVDF membrane (Bio-Rad; USA). Blocking solutions were prepared separately for each antibody. Nrf2 (1/500, Anti-rabbit, Abcam, USA), Slc7a11 (1/500, Anti-rabbit, Abcam, USA), Gpx-4(1/1000, Anti-rabbit, Abcam, USA), p-Jnk (1/1000, Anti-mouse, Abcam, USA) and β-Actin (1/500, Anti-rabbit, Santacruz, USA) were used as primary antibodies. Polyclonal IgG-HRP goat Anti-mouse (1/5000, Dako, Denmark) and IgG-HRP goat Anti-rabbit (1/16000, Santacruz, USA) were then used as secondary antibodies. Detection was performed using the GE Amersham ECL and Western Blotting kits (Amersham; GE Health care) and autoradiography [19 (link)]. Signal quantification was performed using Image J software.
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4

Immunohistochemical Analysis of SLC7A11 in GBM

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Face cuts from formalin-fixed, paraffin-embedded blocks of tissue from GBM patients were identified by board-certified neuropathologists as containing tumor core, edge, or rim (core: hypercellular, angiogenic areas; edge: interface between tumor core and peritumoral brain; rim: peritumoral brain). 1 mm tissue punches from marked regions were serially sectioned at 8 μm thickness(49 ). Using standard IHC processing protocols, sections were stained for SLC7A11 (1:25 dilution; Abcam), followed by a peroxidase-conjugated secondary antibody, with diaminobenzidine/hydrogen peroxide as chromogen/substrate. Scoring was based on a 0–3 staining intensity scale (matched areas of adjacent brain for each tissue sample used as reference for relative change of tumor versus peritumoral brain). Only tissues successfully processed for staining were analyzed (41/45 samples). Tumor cores consistently showed higher cellular density than tumor rim or peritumoral brain. Because of patient-to-patient variability, we did not attempt to establish correlation of SLC7A11 expression and cellular density.
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5

Quantitative Western Blot Analysis

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Western blot analysis was performed as previously described [16 (link)]. Briefly, the collected cells were lysed with RIPA to extract protein. Afterwards, the samples were transferred to nitrocellulose filter membranes and 5% skim milk powder solution, and then, the primary antibody (GPX4, SLC7A11, NQO1, HO-1, 1:1,000 dilution, Abcam, Cambridge, USA; NRF2, 1:1,000 dilution, Beyotime, China) was incubated at 4°C overnight. The membranes were then washed and incubated with the secondary antibody. β-Actin (1:2,000 dilution, CST, Danvers, USA) was used as an internal control.
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6

Western Blot Analysis of Ferroptosis Markers

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The sample was added to a 10% gel for electrophoresis. After electrophoresis, the protein was transferred to the membrane (Millipore, #IPVH00010) and then hybridized with the antibody. Finally, the signal on the membrane was detected by an ECL kit (Thermo, #34096). Antibodies: GPX4 (Abcam, #ab125066), SLC7A11 (Abcam, #ab175186), ACSL4 (Abcam, #ab155282), NRF2 (Proteintech, #16396-1-AP), FSP1 (Proteintech, #20886-1-AP), β-actin (CST, #4970s), PI3K (CST,#4249s), AKT (CST,#9272s), P-AKT (CST,#4060s), and mTOR (CST,#2983s).
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7

Western Blot Analysis of Mitochondrial Proteins

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Cells and renal tissue were lysed in cold RIPA buffer containing protease inhibitor cocktails. The total protein concentrations were quantified using a BCA protein assay kit. Equal amounts of total protein were separated in 10–15% SDS-PAGE, and samples were transferred onto nitrocellulose membranes, blocked with 5% skimmed milk in TBS/0.5% Tween (TBST) for 1 hour, washed with TBST for three times, and incubated with primary antibodies against MFN2 (1 : 500, Affinity Biosciences), UCP2 (1 : 500, Affinity Biosciences), NRF2 (1 : 500, Proteintech), Slc7a11 (1 : 1000, Abcam), GPX4 (1 : 500, Proteintech), and β-actin (1 : 1000, Proteintech) overnight at 4°C. The nitrocellulose membranes were washed with TBST for three times, 10 min each, and then incubated with secondary antibodies (1 : 10000, Proteintech) for 1 h at room temperature and then washed with TBST for three times again and added with the enhanced ECL Chemiluminescent Substrate Kit (Yeasen Biotechnology, Shanghai, China) in the membrane. The relative intensity of the target band was detected using the AmerSham Imager 600 image system (GE, USA). Images were quantified using ImageJ software (NIH, USA).
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8

Western Blotting and qPCR Analysis

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Western blotting and quantitative PCR (RT‐qPCR) were performed following the previous report.
43 (link) Following antibodies were used in Western blotting: Actin, FSP1, ACSL4, SLC7A11, VDAC2, and GPX4 rabbit polyclonal antibodies (1:1000; Abcam); VCAM‐1 and ICAM‐1 (1:500; Santa Cruz Biotechnology, Inc, Dallas, TX, USA). The primers used in RT‐qPCR are shown in Table S1.
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9

SLC7A11 and Cyclin D1 Protein Expression

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Total protein samples were extracted and the concentrations were determined using a BCA protein assay kit (Thermo Fisher Scientific, Waltham, MA, USA). Sample lysates (10 μg of protein) were separated by SDS-PAGE and transferred onto a PVDF membrane. The membrane was incubated with specific antibodies for SLC7A11 (1:1,000) or cyclin D1 (1:3,000; Abcam, Cambridge, MA, USA) at 4°C overnight followed by incubation with secondary antibodies. Protein levels were normalized to those of total GAPDH using a monoclonal anti-GAPDH antibody (Sigma-Aldrich Corporation, St. Louis, MO, USA). Autoradiograms were quantified by densitometry (Quantity One software; Bio-Rad).
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10

DNMT3A, SLC7A11 Protein Expression

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Standard western blot analysis was performed with antibodies for DNMT3A (Cell Signaling Technology, Danvers, MA, USA), SLC7A11 (Abcam, USA) and β-actin (Santa Cruz, CA). The protein bands were detected by enhanced chemiluminescence (Pierce Biotechnology, Rockford, IL).
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