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5 protocols using lambda 10 b smart shutter

1

Spectral Karyotyping of Thymic Lymphomas

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Metaphases from thymic lymphomas were obtained as described (48 (link)). Spectral karyotyping was performed per instructions (Applied Spectral Imaging, ASI). Slides were examined with a BX61 microscope (600× magnification) from Olympus controlled by a LAMBDA 10-B Smart Shutter (Sutter Instrument). Images were captured using a LAMBDA LS light source (Sutter) and a COOL-1300QS camera (ASI), and analyzed by Case Data Manager Version 5.5 (ASI).
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2

Ratiometric FRET Imaging of AKAR4 Biosensor

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For sensitized emission measurements of AKAR4 biosensor in HeLa cells wide-field images were captured with a Nikon TiE inverted microscope with a 20 × 0.5NA objective and a DS-Qi2 CMOS camera (Nikon, Japan). Images were acquired at intervals of 2 min with the Nikon NIS-Elements acquisition software using JOBS module (Nikon, Japan). A Lumencor Spectra X LED Light Engine (Lumencor, Beaverton, OR, USA) was used as excitation light source to reduce phototoxicity. Ratio imaging used a 440/30 nm excitation filter, a t440/510/575rpc multi-band dichroic mirror, and two emission filters (ET480/40 M (cyan fluorescent protein: CFP) and AT545/30 M (FRET)). Lumencor provided excitation filters, and all dichroic mirrors and emission filters were obtained from Chroma Technology (Brattleboro, VT, USA). An automated emission filter wheel Lambda 10-B Smart Shutter (Sutter Instrument, Novato, CA, USA) was used. The F480/F545 emission ratio, indicative of biosensor activation, calculated for each pixel on the whole image, was performed with custom routines written in IGOR Pro environment (Wavemetrics, Lake Oswego, OR, USA). Normalized F480/F545 emission ratio values were then plotted in PrismV (GraphPad software, La Jolla, CA, USA) and displayed in two ways: cell trace for each individual cell (grey) overlaid with the population mean in red and the 25th and 75th percentile values in blue.
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3

Fluorescence Microscopy Imaging Setup

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Fluorescence microscopy images were acquired with a Nikon Eclipse 80i microscope and 10x/0.30 Nikon objective (Nikon Corporation), equipped with a SPOT RT3 CCD camera (Diagnostic Instruments), controlled by SPOT Advanced imaging software (v. 5.0) with Peripheral Devices and Quantitative Imaging modules. A Nikon Intensilight C‐ HGFI 130‐W mercury lamp, shuttered with a Lambda 10‐B SmartShutter (Sutter Instruments), was used for GFP excitation, and a GFP filter set (470/40 × 495lpxr 525/50 m; Chroma Technologies) was used for detection.
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4

Analyzing Fungal Spore Germination

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Germination and bursts of spores were observed with the Nikon Eclipse Ti. The Nikon Eclipse Ti had for phase contrast imaging a Prior Brightfield LED, a Nikon CFI Plan Apo Lambda 100X Oil, C11440-22CU Hamamatsu ORCA flash 4.0 camera, LAMBDA 10-B Smart Shutter from Sutter Instrument, an OkoLab stage incubator, and was equipped with NIS elements software version 4.50.00. The slide was prepared according to the method developed in our laboratory [30 (link)]. In brief, a 1.5 cm × 1.6 cm Gene Frame® (Thermo Scientific, Landsmeer, Netherlands) was attached to a microscope slide with a semisolid matrix pad, made of 1.5% agarose with complete minimal medium [31 (link)], 10 mM L-valine and AGFK (10 mM L-asparagine, 10 mM glucose, 1 mM fructose and 1 mM potassium chloride), in the centre of the frame. Spores were then loaded on the pad and covered with a 18 × 18 mm glass coverslip (Thermo Scientific). Pressure was applied on the edges of the cover slip onto the Gene Frame®, to make it a closed air-containing chamber which was then used for time-lapse microscopy. A sample frequency of 1 frame per 2 min was taken for the individual spores. The start of germination, end of germination and burst of each spore from three biological replicates were assessed with the aid of the ImageJ plugin SporeTrackerX [32 (link)].
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5

Live Imaging of Calcium Dynamics

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Live imaging was performed on a spinning disk confocal system that uses a Nikon 60 × 1.2 NA water objective, a Photometrics Prime 95B EMCCD camera, and a Yokogawa CSU-X1 confocal scanner unit. Images were acquired and analyzed by Nikon’s NIS imaging software and ImageJ/FIJI Bio-formats plugin (National Institutes of Health) (Linkert et al., 2010 (link); Schindelin et al., 2012 (link)). GCaMP3 images were also acquired by a 60×/1.40 NA oil-immersion objective on a Nikon Eclipse 80i microscope equipped with a SPOT RT39M5 sCMOS camera (Diagnostic Instruments, Sterling Heights, MI, USA) with a 0.63x wide field adapter, controlled by SPOT Advanced imaging software (v. 5.0) with Peripheral Devices and Quantitative Imaging modules. Images were acquired at 2448 × 2048 pixels, using the full camera chip, and saved as 8-bit TIFF files. Fluorescence excitation was provided by a Nikon Intensilight C-HGFI 130 W mercury lamp and shuttered with a Lambda 10-B SmartShutter (Sutter Instruments, Novato, CA), also controlled through the SPOT software. Single-channel GCaMP time-lapse movies were acquired using a GFP filter set (470/40 × 495 lpxr 525/50 m) (Chroma Technologies, Bellows Falls, VT) at 1 frame per second, with an exposure time of 40–60 ms, gain of 8, and neutral density of 16.
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