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Nuclear red

Manufactured by Vector Laboratories
Sourced in Canada, United States

Nuclear Red is a fluorescent dye that binds to nucleic acids, specifically DNA and RNA. It can be used to detect and visualize nucleic acids in various applications such as gel electrophoresis, flow cytometry, and fluorescence microscopy.

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3 protocols using nuclear red

1

Quantifying Apoptosis in Skin Samples

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Paraffin embedded sections were analyzed by TUNEL assay (DermaTACS, Trevigen, Gaithersburg MD) counterstained with Nuclear Red (Vector Laboratories, Burlingame CA). Cell death was quantitated by photographing four consecutive fields. The percent of apoptotic cells was determined by counting the number of epidermal blue apoptotic cells and dividing by the total number of epidermal cells in the field. In addition to the histologic assessment described above, we quantitatively evaluted apoptosis by measuring caspase-3 activity in the supernatant of homogenized tissue samples using the luminescence Caspase- GloR 3/7 assay kit (Promega, Madison, WI). Three 6 mm punch biopsies were homogenized in 300 μl of PBS+2mM EDTA and were centrifuged at 1000 g for 10 min. Results were normalized to mg tissue for mouse skin and mg protein for human skin.
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2

Quantifying Epidermal Apoptosis in Sunburn

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Epidermal cells containing pyknotic nuclei and eosinophilic cytoplasm were counted in H&E stained sections. To confirm the presence of epidermal apoptotic cells, paraffin embedded sections were analyzed by TUNEL assay (DermaTACS, Trevigen, Gaithersburg MD) and counterstained with Nuclear Red (Vector Laboratories, Burlingame CA). The percent of sunburned/apoptotic cells was quantitated by counting five fields at 400X and averaging results to obtain a single value per sample.
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3

miRNA Expression Analysis in FFPE Tissues

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miRNA ISH was carried out on formalin-fixed and paraffin embedded (FFPE) tissue sections according to the kit manufacturer's instructions (miRCURY LNA™ microRNA ISH Optimization Kit; Exiqon Inc., Vedbaek, Denmark). Briefly, the sections were deparaffinized in xylene and rehydrated with graded ethanol with final wash in PBS. The sections were then incubated with Proteinase-K, and hybridized with the miR-421, miR-29-1-5p double-digoxigenin (DIG)-labeled LNA™ probe. A specific anti-DIG antibody directly conjugated with alkaline phosphatase (AP) was applied, and then the sections were incubated the slide in KTBT buffer. The slides were counterstained with Nuclear Red (VECTOR Laboratories Inc., CA, USA).
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