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Tris glycine mini gel

Manufactured by Thermo Fisher Scientific
Sourced in United Kingdom, United States

Tris-Glycine Mini Gels are a type of electrophoresis gel used for the separation and analysis of proteins and other macromolecules. They are pre-cast and ready-to-use, designed for use in Mini-PROTEAN or similar electrophoresis systems.

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7 protocols using tris glycine mini gel

1

Quantification of FOXM1 Protein Expression

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The cell lysates were prepared using a RIPA buffer (Thermo Scientific, St. Peters, MO, USA) with a protease inhibitors mixture (Roche Applied Science, Mannheim, Germany). Lysate was agitated for 30 min at 4 °C then centrifuged at 14,000 rpm for 10 min at 4 °C to collect the supernatants, and then the protein concentration was measured using the Bio-Rad DC Protein Assay (Biorad, UK). Then, 20 µg of each protein sample was then loaded onto 4–12% Tris-Glycine mini gels (Invitrogen), and was transferred to nitrocellulose membrane (GE Healthcare, Amersham, Buckinghamshire, UK). The membranes were incubated with the indicated antibodies, and the FOXM1 (C-20) (Cat#sc-502) antibody was purchased from Santa Cruz Biotechnology (Santa Cruz Biotechnology, Santa Cruz, CA, USA). Other antibodies were purchased from Cell Signalling Technology (New England Biolabs Ltd., Hitchin, UK). Primary antibodies were detected using horseradish peroxidase-linked anti-mouse or anti-rabbit conjugates, as appropriate (Dako, Glostrup, Denmark), and were visualized using the UVITEC chemiluminescence imaging platform (UVITEC, UK). The intensities of the protein bands were then quantitated using an ImageJ program and were normalized by dividing the intensity of the bands with the that of the actin band as the control.
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2

Western Blot Analysis of FOXM1 and HA Proteins

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Western blots were performed using antibodies for anti-FOXM1 (sc-502) and anti-HA (sc-543) and anti-β-actin (ab6276) purchased from Abcam. Fluorescent imaging of GFP-FOXM1 was performed using an anti-GFP antibody (ab290) purchased from Abcam. Cell lysates were prepared using RIPA buffer (20 mM Tris–HCl, pH 7.5, 150 mM NaCl, 1 mM Na2EDTA, 1 mM EGTA, 1 % NP-40, 1 % sodium deoxycholate, 2.5 mM sodium pyrophosphate, 1 mM ß-glycerophosphate, 1 mM Na3VO4) with proteasome inhibitors (Roche). Lysate was agitated for 30 min at 4 °C by end-to-end rotation, supernatant collected following centrifugation (13,000 rpm, 4 °C, 10 min) and protein concentration measured by BCA (Pierce) assay. Samples loaded onto 4–12 % Tris-Glycine mini gels (Invitrogen), purified by SDS-PAGE and transferred to nitrocellulose membrane (Invitrogen). Membranes were incubated in Odyssey blocking buffer (LiCor) for 1 h at room temperature and probed with FOXM1, HA, or GFP antibody 1:1,000 and β-actin 1:5,000 overnight at 4 °C. For detection, the blot was incubated with LiCor IRDye secondary antibodies; 680LT goat anti-rabbit IgG and 800LT goat anti-mouse IgG both at 1:10,000 and visualized using an Odyssey scanner.
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3

Optimized Western Blot Protein Extraction

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Cells were washed with ice-cold PBS and lysed in RIPA buffer (150 mM Tris-HCl pH 7.4, 150 mM NaCl, 1% sodium deoxycholate, 1% SDS, 2% Octyl-β-d-glucopyranoside, 0.5 mM DTT) containing protease and phosphatase inhibitor cocktails (both from Roche). Samples were lysed on ice for 30 minutes, sonicated, and microcentrifuged at 18,000 RCF for 20 minutes at 4°C. Protein concentrations were determined using the Pierce BCA Protein Assay Kit (Thermo Fisher Scientific) according to the manufacturer’s instructions. Samples were boiled in reducing Laemmli sample buffer, and 10 μg of protein per lane was separated on Tris-Glycine Mini Gels (Invitrogen, Thermo Fisher Scientific). Proteins were transferred onto the PVDF membrane using the Transblot Turbo transfer system (Bio-Rad). Membranes were blocked in 5% nonfat dried milk in 0.1% TBS with Tween (TBS-T) for 1 hour at room temperature and then incubated with primary antibodies overnight at 4°C. After washes with 0.1% TBS-T, membranes were incubated with appropriate HRP-conjugated secondary antibodies (Dako). Finally, the signal was developed with Supersignal West Pico ECL substrate (Thermo Fisher Scientific) or Clarity Western ECL substrate (Bio-Rad) and exposed to Super RX-N FUJIFILM Medical X-ray Film. See complete unedited blots in the supplemental material.
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4

Preparation and Analysis of Whole Cell Lysates

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Whole cell extracts were prepared by harvesting cells in lysis buffer A (25 mM Tris-HCl (pH 7.6), 150 mM NaCl, 0.1% NP-40, 0.1% sodium deoxycholate, 0.01% SDS) supplemented with 1 × HALT protease inhibitor cocktail (ThermoFisher) and 1 × phosphatase inhibitor cocktail 3 (Sigma). Whole cell lysates were cleared from debris by centrifugation at 20,000 × g for 5 minutes at 4°C. The supernatant (about 30 μg protein per lane) was separated under reducing conditions on 8% tris-glycine mini gels (Invitrogen) following the manufacturer’s protocol, blotted onto PVDF membranes, and labeled with antibodies following standard procedures. For a list of primary antibodies, antibody concentrations and blocking conditions see Table 1. All tau phosphorylation sites throughout the manuscript, in Table 1, and in the figures are referred to by their amino acid position in the human 2N4R tau protein. Please see Figure S1A in the supplementary material for the corresponding sites in the mouse protein. Alkaline-phosphatase-conjugated secondary antibodies diluted 1:5,000 in 5% (w/v) dry milk powder in TBST (tris buffered saline with 0.1% Tween20) and 1-step NBT/BCIP substrate (ThermoFisher) were used for protein detection.
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5

Cloning and Expressing Mouse DNA Repair Genes

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Full-length cDNAs encoding Spidr, Rad51 and Dmc1 were amplified by RT-PCR from murine testis RNA. Full-length cDNAs were cloned into the pcDNA3.1 mammalian expression vectors. HEK 293T was maintained in DMEM supplemented with 10% FBS and 1% penicillin and streptomycin in a 37°C incubator with 5% CO2. Cell transfection was performed using lipofectamine 3000 (Invitrogen), following the manufacturer's protocol. The same amount of antibody and IgG were added into the cell extract and the mixture was incubated at 4°C overnight. After incubation, immunocomplexes were isolated by adsorption to protein A/G Sepharose beads for 2 h. The beads were added loading buffer in proportion, boiled at 95°C, and loaded onto 10% Tris-Glycine Mini Gels (Invitrogen).
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6

SDS-PAGE Analysis of Tra-IR700 Conjugate

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SDS‐PAGE with 4%–20% Tris‐Glycine mini gel (Thermo Fisher Scientific) was used. After electrophoresis at 20 mA for 90 min, the fluorescence band on the gel was measured using a PEARL Imager (LI‐COR Bioscience) at 700 nm channels as described previously.27 Diluted trastuzumab was used as a control. The band on the gel with colloidal blue staining was measured to estimate the molecular weight of tra‐IR700.
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7

Exosome Protein Analysis by Western Blot

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Collected exosomes were resuspended in 2x Tris-Glycine SDS Sample buffer and denatured at 95℃ for 5 min. All samples were then subjected to a 4–20% Tris-Glycine mini gel (Thermo Fisher Scientific, Waltham, MA, USA) and electrophoresed at 225 V for 35 min in Tris-Glycine SDS running buffer. Following electrophoresis, the proteins were then transferred onto a PVDF membrane (Thermo Fisher Scientific) and probed with primary biotin-conjugated antibody for CD9 (Clone 30B, rat IgG, FUJIFILM Wako, Osaka, Japan) and streptavidin with the polymerized form of horseradish peroxidase (Thermo Fisher Scientific). The membranes were incubated with ImmunoStar LD (FUJIFILM), and images were subsequently acquired and analyzed for signal intensity using FUSION SOLO 7S (Vilber Bio-Imaging, Collégien, France).
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