For
BrdU-PI flow cytometry, cells were labeled with 10 μM
BrdU (Sigma-Aldrich) for 1 h. Cells were collected, washed with ice-cold PBS and fixed in 80% ethanol overnight at -20 °C. Cells were washed once with cold PBS and resuspended in 2 M HCl, 0.5% Triton X-100 for 30 min at room temperature. The cell suspension was neutralized in 0.1 M Na
2B
4O
7 (pH 8.5), and cell pellets were resuspended in 100 μl 1% BSA in PBS-T (0.5% Tween-20 in PBS) containing anti-
BrdU-FITC antibody (BioLegend) for 30 min at room temperature in the dark. Cells were washed once with 1% BSA in PBS-T. Cell pellets were resuspended in PBS with RNase A (24 μg/ml) and propidium iodide (54 μM), and incubated for 30 min at 37 °C.
For annexin-PI flow cytometry, the medium in which the cells were cultured was combined with the cells. The cells were washed once with ice-cold PBS, resuspended in 100 µl Annexin V Binding buffer (10 mM HEPES pH 7.4, 140 mM NaCl, 2.5 mM CaCl
2) with 2 µl Annexin V/Pacific Blue dye, and incubated for 15 min in the dark at room temperature. 400 µl Annexin V Binding buffer with propidium iodide (18.5 µM) was added. Samples were stored cold in the dark until analysis.
Flow cytometry was done on a
BD FACSCanto II flow cytometer. Data were analyzed using BD FACSDIVA software and FlowJo (version 8.8.6).
Adhikari B., Bozilovic J., Diebold M., Schwarz J.D., Hofstetter J., Schröder M., Wanior M., Narain A., Vogt M., Stankovic N.D., Baluapuri A., Schönemann L., Eing L., Bhandare P., Kuster B., Schlosser A., Heinzlmeir S., Sotriffer C., Knapp S, & Wolf E. (2020). PROTAC-mediated degradation reveals a non-catalytic function of AURORA-A kinase. Nature chemical biology, 16(11), 1179-1188.