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Agilent 6530 accurate mass q tof lc ms spectrometer

Manufactured by Agilent Technologies
Sourced in Germany

The Agilent 6530 Accurate-Mass Q-TOF LC-MS spectrometer is a high-resolution mass spectrometry instrument designed for qualitative and quantitative analysis. It utilizes quadrupole time-of-flight (Q-TOF) technology to provide accurate mass measurements and high-resolution capabilities for the characterization of small molecules and large biomolecules.

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5 protocols using agilent 6530 accurate mass q tof lc ms spectrometer

1

Comprehensive Structural Characterization

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Optical rotations, CD, UV and FT-IR spectra were measured with a Rudolph Research analytical AutoPol automatic polarimeter (Rudolph Research Analytical, NJ, United States), JASCO J-815 CD (Jasco Corporation, Japan), Shimadzu UV spectrophotometer UV-1800 and Thermo Scientific Nicolet iS10 IR spectrometer (Thermo Fisher Scientific, WI, United States), respectively. The structure characterizations of all the compounds were based on 1D NMR (1H, 13C) and 2D NMR (COSY, HSQC, HMBC, 1D-NOE and ROESY) data, recorded on a Bruker AM-400 spectrometer (Bruker BioSpin AG, Switzerland). An Agilent 6,530 Accurate-Mass Q-TOF LC-MS spectrometer (Agilent Technologies, Germany) was used to record high-resolution mass spectra. Preparative RP-HPLC was carried out on an Ultimate 3000 chromatographic system (Agilent Technologies, Germany) with a Phenomenex preparative column (Phenyl-hexyl, 5 μ, 100 × 21.2 mm) and semipreparative RP-HPLC on an Ultimate 3000 chromatographic system (Agilent Technologies, Germany) with a Phenomenex semipreparative column (C18, 5 μ, 250 × 10 mm), connected to a Dionex Ultimate 3000 DAD detector (Agilent Technologies, Germany) (detected at 210, 254, 320, and 365 nm) and a Dionex Ultimate 3000 automated fraction collector. All solvents were HPLC grade. Diaion HP-20 (Alfa Aesar, Japan) was used to run the open-column chromatography.
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2

Comprehensive Characterization of Organic Compounds

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Optical rotations, CD and IR spectra were measured with a Rudolph Research analytical AutoPol automatic polarimeter (Rudolph Research Analytical, Hackettstown, NJ, USA), JASCO J-815 CD (Jasco Corporation, Tokyo, Japan) and Thermo Scientific Nicolet iS10 IR spectrometer (Thermo Fisher Scientific, Madison, WI, USA), respectively. The structure characterizations of all the compounds were based on 1D NMR (1H, 13C) and 2D NMR (COSY, HSQC, HMBC, 1D-NOE and ROESY) data, recorded on a Bruker AM-400 spectrometer (Bruker BioSpin AG, Faellanden, Switzerland). An Agilent 6530 Accurate-Mass Q-TOF LC-MS spectrometer (Agilent Technologies, Waldbronn, Germany) was used to record high-resolution mass spectra. Preparative RP-HPLC was carried out on an Ultimate 3000 chromatographic system (Agilent Technologies, Waldbronn, Germany) with a Phenomenex preparative column (Phenyl-hexyl, 5 μ, 100 × 21.2 mm) and semipreparative RP-HPLC on an Ultimate 3000 chromatographic system (Agilent Technologies, Waldbronn, Germany) with a Phenomenex semipreparative column (C18, 5 μ, 250 × 10 mm), connected to a Dionex Ultimate 3000 DAD detector (Agilent Technologies, Waldbronn, Germany) (detected at 210, 254, 320 and 365 nm) and a Dionex Ultimate 3000 automated fraction collector. All solvents were HPLC grade. Diaion HP-20 (Alfa Aesar, Japan) was used to run the open-column chromatography.
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3

Analytical Characterization of Natural Products

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Optical rotations were carried out on an MCP 200 (Anton Paar, Graz, Austria) polarimeter. UV spectra were measured at a Lambda 950 UV-Vis-NIR spectrophotometer (PerkinElmer, Akron, OH, USA). A Chirascan-plus Circular Dichroism Spectrometer (Applied Photophysics Ltd., Leatherhead, UK) was used to obtain experimental ECD data. A Fourier transformation infra-red spectrometer (FTIR) coupled with an infra-red microscope EQUINOX 55 (Bruker, Wissembourg, France) recorded the FTIR spectrum. NMR spectra were tested by a BRUKER AVANCE III HD (400 MHz) NMR spectrometer with tetramethylsilane (TMS) as the internal standard. HR-ESIMS data were determined using an Agilent 6530 accurate-Mass Q-TOF LC-MS spectrometer. Column chromatography (CC) was used using silica gel (200–300 mesh, Qingdao Marine Chemical Factory, Qingdao, China). The semi-preparative HPLC was performed on an Essentia LC-16 (Shimadzu, Jiangsu, China). Acetylcholine esterase (AChE) was from Electrophorus electricus (product number: C3389-2KU, Sigma-Aldrich, Saint Louis, MO, USA).
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4

Kinetic Analysis of StnA-Catalyzed Hydrolysis

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All the reactions were performed in citrate-phosphate buffer pH 6 at 30 °C with 25 nM StnA and 100 μM 4. These experiments were performed in triplicates. The products were analyzed with High Performance Liquid Chromatography (HPLC). The HPLC analysis was conducted using HPLC system (Agilent 1200 series, Agilent technologies) coupled with a ZORBAX SB-C18 (Agilent, 5 μm, 4.6 × 150 mm) column at the flow rate of 0.3 mL/min with detection at 210 nm, 245 nm, and 375 nm. For the analysis of the StnA-catalyzed hydrolytic reactions of 4, HPLC analysis was performed using a 25 min gradient from 10–100% CH3CN containing 0.1% formic acid in H2O containing 0.1% formic acid. High-resolution mass was performed using Agilent 6530 Accurate-Mass Q-TOF LC-MS spectrometer coupled with an Agilent HPLC 1200 series. The kinetic parameters of StnA-catalyzed hydrolysis of 4 were determined in the condition including 20 nM StnA, 50 mM citric acid/Na2HPO4 buffer (pH 6.0), and 4 with varying concentrations from 11 to 85 μM in a 100 μl final volume. The data were analyzed using the Michaelis–Menten equation, and the reported error indicated the standard deviation among the three replicates.
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5

Analytical Techniques for Natural Product Isolation

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Column chromatography (CC) was carried out with Kieselgel 60 silica gel (70-230 and 230-400 mesh, Merck, Darmstadt, Germany) and YMC RP-silica gel (150μm, Fuji Silysia Chemical, Aichi, Japan). Thin layer chromatography (TLC) was performed using a pre-coated silica-gel 60 F254 (0.25 mm, Merck) and RP-18 F254S plates (0.25 mm, Merck). NMR spectra were recorded using an Agilent 400-MR NMR spectrometer (Santa Clara, CA, USA). HR-ESI-MS were conducted using an Agilent 6530 Accurate-Mass Q-TOF LC/MS spectrometer (Santa Clara, CA, USA).
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