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8 protocols using cr3022

1

Fluorescent Labeling of Monoclonal Antibody

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Monoclonal antibody CR3022 was purchased from Absolute Antibody (catalog number Ab01680–10.0). Biotin-PEG4-Amine (Nanocs, catalog number B-P4A-1) was dissolved in distilled water at a concentration of 10 mM (4.36 mg/ml). Fifty micrograms of DyLight650 NHS Ester (Thermo Fisher, catalog number 62266, MW = 1066) was dissolved in 100 μl phosphate buffered saline (PBS, 137 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, and 1.8 mM KH2PO4), resulting in a 0.47 mM solution. Fifty micrograms of DyLight488 NHS Ester (Thermo Fisher, catalog number 46403, MW = 1011) was dissolved in 100 μl PBS, resulting in a 0.47 mM solution. Eighty microliters of the DyLight650 NHS Ester or DyLight488 NHS Ester solution were mixed with 2.4 μl of the biotin-PEG4-Amine stock solution, corresponding to a dye:amine ratio of 1.57:1. After 1 h at room temperature, the reaction was quenched by the addition of 1 μl of 2 M Tris-HCl pH 8.0. We assumed that the reaction was complete, resulting in a 0.288 mM solution of biotin-PEG4-dye. These solutions were used without further purification, because the unreacted dye is not expected to interfere with the assay, as it is removed in multiple washing steps in the MBBA procedure.
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2

Characterization of SARS-CoV-2 RBD Antibodies

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Recombinant human IgG1 isotype control antibody (Clone. No. QA16A12), mouse IgG1 isotype control antibody (Clone. No. MOPC-21), PE-conjugated mouse anti His tag mAb (Clone. No. J095G46) and PE-conjugated isotype control antibody (Clone. No. MOPC-173) were purchased from Biolegend (San Diego, CA). Other antibodies used in this study include AF488-conjugated goat anti human or mouse IgG (H+L) polyclonal antibodies (pAbs) (Thermo Fisher, Rockford, IL), rabbit anti spike RBD neutralizing mAb 001 (Sino Biological, Beijing, China), recombinant human IgG1 anti spike RBD neutralizing mAb BDAB0065 (Biodragon, Suzhou, China), anti-spike RBD non-neutralizing mAb HMB001-N (Bioworld Technology, Nanjing, China) and recombinant human IgG1 anti SARS spike RBD neutralizing mAb CR3022 (Absolute Antibody, Cleveland, UK). According to the technical datasheets, the 001 mAb is a potent strain-specific nAb against Wuhan strain other than any omicron variants, whereas the BDAB0065 mAb is a broadly nAb against both Wuhan strain and omicron BA.1. The CR3022 mAb has a strong cross binding activity to SARS-CoV-2 RBD protein, but doesn’t show neutralizing activity to SARS-CoV-2 (22 (link)).
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3

SARS-CoV-2 S1 Protein IgG ELISA

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Ninety-six-well MaxiSorp plates (Thermo Fisher Scientific) were coated overnight at 4 °C with purified S1 protein in PBS (3 μg ml−1 per well in 50 μl) and blocked for 1 h in blocking buffer (PBS, 5% milk, 0.05% Tween 20 and 0.01% sodium azide). Sera were diluted in blocking buffer (1:50). Fifty microliters of serum was then added to the wells and incubated for 2 h at room temperature. After washing four times with PBS-T (PBS and 0.05% Tween 20), plates were incubated with alkaline phosphatase-conjugated goat anti-human IgG (1:1,000, Jackson ImmunoResearch) for 1 h. Plates were developed by adding 50 μl of alkaline phosphatase substrate (Sigma-Aldrich) for 15–30 min after six washes with PBS-T. Optical densities were measured at 405 nm on a microplate reader (Tecan). CR3022 (Absolute Antibody) was used as a positive control. The cutoff for a positive response was defined as the mean negative value multiplied by 0.35 times the mean positive value.
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4

SARS-CoV-2 Spike and RBD ELISA Assay

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RBD and spike ELISAs were modified from Amanat et al. and conducted as previously described [6 (link),8 (link)]. ELISA plates were coated either with RBD (Sino Biological, Wayne, PA, USA), nucleocapsid (Gift from B. Geiss Lab) or spike protein (Sino Biological, Wayne, PA, USA). Samples and controls were added after 1 h of blocking (1X PBS, 3% milk powder, 0.1% tween). Positive controls included convalescent patient serum (gift of R. Goodrich) and monoclonal antibody CR3022 (Absolute Antibody, Boston, MA, USA). Negative control serum was charcoal inactivated pooled human serum collected in 2015 (Jackson Immuno Research, West Grove, PA, USA). Secondary antibody was added followed by development and reading via spectrophotometer (Thermo Fisher, Dallas, TX, USA).
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5

ELISA for Measuring RBD Binding

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2.5 μg/ml of monoclonal antibody CR3022 (Absolute Antibody) or 3 μg/ml of HEK293-produced human ACE2-Fc (Klausberger et al., 2021 (link)) were coated (50 μl/well) in bicarbonate buffer or PBS, respectively, onto NUNC MaxiSorp 96 well plates (Thermo Fisher Scientific) overnight at 4°C. Plates were washed three times with PBS supplemented with 0.1% (v/v) Tween 20 (PBST) and subsequently blocked for 1 h with 1% (w/v) BSA in PBST. Purified RBD was diluted in PBST supplemented with 1% BSA (twofold dilution series: 1–0.0625 μg/ml) and incubated for 2 h. The plates were washed 3 times with PBST and incubated for 1.5 h with biotin-conjugated anti-His antibody (Thermo Fisher Scientific) diluted 1:1000 in PBST + 1% (w/v) BSA. After washing, plates were incubated for 30 min with streptavidin-horseradish peroxidase (HRP) conjugate (Roche) diluted 1:5000 in PBST + 1% (w/v) BSA. After 3 washes, substrate solution [10 mM sodium acetate, pH 5 + 1:60 diluted TMB-stock solution (0.4% (w/v) tetramethylbenzidine (Fluka) in DMSO) + 1:300 diluted H2O2 (0.6% in H2O)] was applied (150 μl/well) and plates were incubated for 5–10 min with shaking. Reactions were stopped by the addition of 1 M sulfuric acid (25 μl/well) and absorbance was measured at 450 nm on a Tecan Sunrise Microplate reader using a reference wavelength of 620 nm.
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6

SARS-CoV-2 Viral-Like Particle Production

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Spodoptera frugiperda (Sf9) cells were used for generation of recombinant baculoviruses and for subsequent virus amplification. For production of VLPs Trichoplusia ni (Tnao38) cells [28 (link)] were used. Virus was grown at an MOI of 0.01 and infected cells were incubated for up to 6 days before harvesting the supernatant. Virus infection for protein expression and VLP assembly employed an MOI of 5 and incubation for 4 h, after which the cells were pelleted and re-suspended in fresh culture medium to maximize expression levels [29 (link),30 (link)]. Infected cells were then incubated for a further 72 h by which time cell viability measured by trypan blue exclusion was ~50%. The resultant supernatant was harvested, clarified by centrifugation twice at 4500× g, 4 °C for 20 min, and the VLPs then pelleted by centrifugation through a 25% sucrose cushion, at 100,000× g, 4 °C for 100 min. VLPs were re-suspended in 5 mL of PBS and purified by centrifugation on a 20–60% sucrose gradient at 100,000× g, 10 °C for 18 h. The gradients were fractionated and the presence of S protein assessed by dot blot with CR3022 (Absolute Antibody, Oxford, UK). The pixel density in each dot was assessed using Image J [31 (link)].
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7

Labeling Monoclonal Antibody CR3022 with Dyes

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Monoclonal antibody CR3022 was purchased from Absolute Antibody (catalog number Ab01680-10.0). Biotin-PEG4-Amine (Nanocs, catalog number B-P4A-1) was dissolved in distilled water at a concentration of 10 mM (4.36 mg/ml). Fifty micrograms of DyLight650 NHS Ester (Thermo Fisher, catalog number 62266, MW = 1066) was dissolved in 100 μl phosphate buffered saline (PBS, 137 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, and 1.8 mM KH2PO4), resulting in a 0.47 mM solution. Fifty micrograms of DyLight488 NHS Ester (Thermo Fisher, catalog number 46403, MW = 1011) was dissolved in 100 μl PBS, resulting in a 0.47 mM solution. Eighty microliters of the DyLight650 NHS Ester or DyLight488 NHS Ester solution were mixed with 2.4 μl of the biotin-PEG4-Amine stock solution, corresponding to a dye:amine ratio of 1.57:1. After 1 h at room temperature, the reaction was quenched by the addition of 1 μl of 2 M Tris-HCl pH 8.0. We assumed that the reaction was complete, resulting in a 0.288 mM solution of biotin-PEG4-dye. These solutions were used without further purification, because the unreacted dye is not expected to interfere with the assay, as it is removed in multiple washing steps in the MBBA procedure.
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8

Baculovirus-Mediated Recombinant VLP Production

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Spodoptera frugiperda (Sf9) cells were used for generation of recombinant baculoviruses and for subsequent virus amplification. For production of VLPs Trichoplusia ni (Tnao38) cells (26) were used.
Virus was grown at an MOI of 0.01 and infected cells were incubated for up to 6 days before harvesting the supernatant. Virus infection for protein expression and VLP assembly employed an MOI of 5 and incubation for 4 hours, after which the cells were pelleted and re-suspended in fresh culture medium.
Infected cells were then incubated for a further 72 hours. The resultant supernatant was harvested, clarified by centrifugation twice at 4500 x g, 4°C for 20 minutes, and the VLPs then pelleted by centrifugation through a 25% sucrose cushion, at 100,000 x g, 4°C for 100 minutes. VLPs were resuspended in PBS and purified by centrifugation on a 20-60% sucrose gradient at 100,000 x g, 10°C for 18 hours. The gradients were fractionated and the presence of S protein assessed by dot blot with CR3022 (Absolute Antibody). The pixel density in each dot was assessed using Image J (27) .
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