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32 protocols using withaferin a

1

Withanolide Extraction and Analysis

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Withanolide extraction from control and 24ISO-silenced plants and analysis of withanolides by LC-QTOF-MS were done as described previously (14 (link)). Withaferin A was identified based on MS/MS data compared with that of authentic standard Withaferin A (Sigma). Six biological replicas were analyzed for both control and VIGS plants.
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2

AML Cell Line Authentication and Inhibitor Use

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Human AML cell lines were purchased from the ATCC (THP1) and DSMZ (OCI-AML3, U937, MV4;11 and SHI-1), authenticated by short tandem repeat profiling using the PowerPlex 16 system (Promega, Southampton, UK) and mycoplasma negative status confirmed using the MycoAlert Mycoplasma Detection Kit (Lonza, Verviers, Belgium). The following reagents and inhibitors were used, Withaferin A (Merck Life Science UK, Dorset, UK and Cayman Chemical, Ann Arbor, MI, United States); Cyclohexamide, Thapsigargin and MG132 (Merck Life Science UK); Actinomycin D (Cambridge Bioscience, Cambridge, UK); pifithrin-μ. (Abcam, Cambridge, UK).
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3

Withaferin A Cytotoxicity Assay

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Withaferin A (EMD Millipore) was diluted in DMSO according to the manufacturer’s instructions. Cells were plated 24 h prior to treatment at a concentration of 250,000 cells/mL in six well plates. Cells were treated with concentrations of 0, 1.0, 2.5, 5.0 and 7.5μM Withaferin A, then allowed to incubate for 24 h prior to collection for each experimental procedure as described below.
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4

AML Cell Line Authentication and Inhibitor Use

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Human AML cell lines were purchased from the ATCC (THP1) and DSMZ (OCI-AML3, U937, MV4;11 and SHI-1), authenticated by short tandem repeat profiling using the PowerPlex 16 system (Promega, Southampton, UK) and mycoplasma negative status confirmed using the MycoAlert Mycoplasma Detection Kit (Lonza, Verviers, Belgium). The following reagents and inhibitors were used, Withaferin A (Merck Life Science UK, Dorset, UK and Cayman Chemical, Ann Arbor, MI, United States); Cyclohexamide, Thapsigargin and MG132 (Merck Life Science UK); Actinomycin D (Cambridge Bioscience, Cambridge, UK); pifithrin-μ. (Abcam, Cambridge, UK).
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5

Cell Culture and Transient Transfection

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HEK293T, HeLa, A549, MDA-MB-231 and MDCK cells were cultivated according to standard protocols. Briefly, growth media contained DMEM (high glucose, pyruvate) for HEK293T, HeLa, MDA-MB-231 and MDCK cells or DMEM/F-12 (high glucose, pyruvate) for A549 cells supplemented with L-glutamine and antibiotics if not stated differently. Cells were trypsinized for passaging and cultivated at 37 °C in a humidified chamber with a 5% CO2 atmosphere. Stable A549_VB6-CB cells were generated as described below. For transient transfection of HEK293T of HeLa cells in p100 dishes, 24 μg DNA were mixed with 140 μL polyethylenimine (PEI, Sigma Aldrich) pre-diluted in 600 μL DMEM to generate DNA/PEI complexes, incubated for 15 min and added to the cells. Transient transfection of A549 cells using Lipofectamine LTX and reverse transfection using RNAiMAX was carried out according to manufacturer’s protocols (Life Technologies). Compound treatment with 5 ng/ml TGF-β (Peprotech) or 50–500 nM Withaferin A (WFA, Merck Millipore) was performed up to 72 h.
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6

Chemotherapeutic Agents Induce Apoptosis

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At 50% confluency, cell growth medium containing chemotherapeutic agents were added to the cells for a 72 h incubation. DMSO was used as a solvent. The concentrations were as follows: Temozolomide (TMZ) (cat#T2577, Sigma Aldrich) 250 μM, Withaferin A (WA) (cat#W4394, Sigma Aldrich) 1.5 μM, Sulforaphane (SFN) (cat#574215, EMD Millipore) 10 μM. Cells were also incubated in growth medium containing 0.2% DMSO, or in growth medium. Cells were photographed and apoptosis assays were performed as described above.
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7

Withaferin A Cytotoxicity Evaluation

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Withaferin A (WA) was commercially purchased from Sigma Aldrich (Cat# W4394 SIGMA). Methylthiazolyldiphenyl-tetrazolium bromide (MTT; Cat# M2003) and paraformaldehyde was purchased from Sigma Aldrich. HIV-1 clade B recombinant Tat protein (86-amino acid) was obtained from NIH AIDS research and reference reagent program (Cat# 2222).
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8

Withaferin-A Cytotoxicity Assay Protocol

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Withaferin-A was purchased from Sigma Aldrich. Plasticware used for cell culture experiments was procured from BD Biosciences. The RPMI-1640 and DMEM (Dulbecco’s modified Eagle’s medium) were acquired from HyClone (GE Healthcare, Chicago, IL, USA). Penicillin, streptomycin, and fetal bovine serum (FBS) were obtained from Tianjin HaoYang Biological Manufacture Co. (Tianjin, China). Anti-rabbit and anti-mouse secondary antibodies were procured from Cell Signaling Technology, Inc. (Danvers, MA, USA).
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9

Vimentin-transfected Cell Dynamics

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Healthy vimentin-transfected and well attached cells were chosen and imaged for 1 h prior drug treatment. Subsequently, Withaferin A (Sigma, Poole, UK) with concentrations of 1 µM, 2.5 µM, and 5 µM, or acrylamide (Bio-Rad Laboratories, Watford, UK) with concentrations of 2 mM, 4 mM, and 6 mM was added and cells were imaged for 6 additional hours. Images were captured every 10 min. Cell velocity was calculated as described above on the same cells before and after drug treatment.
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10

Quantification of Withanolide Compounds

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Reference standards for withanoside IV (USP grade, Lot no:1719532), withaferin A (analytical standard, Lot no:89910), and withanolide A (USP grade, Lot no:1719500) were purchased from Sigma-Aldrich (St. Louis, MO, USA). The internal standard, Tianeptine Cas No. 66981-73-5, was procured from Sigma-Aldrich (St. Louis, MO, USA). Methanol, Acetonitrile, o-phosphoric acid, and formic acid (LCMS grade) were purchased from Merck, India and water was collected from a Milli-Q organic-free water system (Millipore Corporation, Bedford, MA, USA). The OasisR HLB solid-phase extraction cartridge was obtained from Waters (Milford, MA).
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