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13 protocols using lipofectamine kit

1

Gastric Cancer Cell Line Profiling

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A total of forty pairs of GC specimens and control specimens were acquired from GC patients who underwent surgery at The Fourth Hospital of China Medical University (Liaoning, Shengyang). Cell lines (HGC-27, MKN-45, SGC-7901, MGC-803 and GES cells) were acquired from ATCC, USA and cultured in DMEM (Gibco, BRL, UK) supplemented with streptomycin/penicillin and FBS (Gibco, BRL, UK). miR-142-5p mimic, pcDNA-MSC-AS1, siRNA-DDX5 and their controls (20 nM) were obtained from Shanghai GenePharma. Cell transfections were carried out with a Lipofectamine kit (Invitrogen, CA, USA).
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2

MITF-M and TYR Promoter Regulation

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B16-F0 cells were transfected with each reporter construct, MITF-M (-2200/+95)-Luc or TYR (-2236/+59)-Luc, in combination with Renilla control vector for 24 h using a lipofectamine kit (Invitrogen, 11668). The transfected cells were stimulated with 100 nM α-MSH for 20 h. Cell extracts were subjected to dual luciferase assay (Promega, E1910). Firefly luciferase activity, reporting promoter activity of MITF-M or TYR gene, was normalized to Renilla luciferase activity as a reference of transfection efficiency.
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3

Generating C3a-expressing CHO Clones

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Chinese hamster ovary (CHO) and mouse Raw 264.7 Blue cells were transfected with the pcDNA.3 plasmid containing the Mouse IL-10 signal peptide (sp)-Mo C3a sequence, synthesized and cloned by Genecust. We used the Lipofectamine kit (Ref L 3000008), as recommended by the supplier (Invitrogen, Waltham, MA, USA), and cells were selected with hygromycin (Ref 10687010, Invitrogen) at a concentration of 400 µg/mL for 7–10 days. CHO clones expressing C3a were obtained by limiting dilutions in 96-well plates.
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4

Regulation of PVT1 and miR-93-5p in Diabetes

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PVT1 siRNA (si-PVT1) and siRNA negative control (si-NC) were synthesized by Shenggong Bioengineering Co., Ltd. (Shanghai, China) (Table 1). MiR-93-5p mimics, miR-93-5p inhibitor, mimics negative control (mimics-NC), and inhibitor negative control (INC) were purchased from Jima Pharmaceutical Technology Co., Ltd. (Shanghai, China). Cells were transfected with the above agents by using a Lipofectamine kit (Invitrogen). Cells without transfection were considered as the control. The transfection efficiency was identified by qRT-PCR. After the transfection for 48 h, cells were incubated in DMEM containing 5.55 mmol/l (normal physiological environment, NG group) or 30 mmol/l d-Glucose (diabetic physiological environment, HG group) for another 48 h. Cells were collected for the following assay.
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5

Transcriptional Activity Assay for AP-1, IRF3, TNF-α, iNOS, and IFN-β

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Luciferase reporter constructs of AP-1-Luc or GAS/ISRE-Luc were used in the determination of transcriptional activity of AP-1 or IRF3 (Promega, Madison, WI, USA), and those of TNF-α (−1260/+60)-Luc, iNOS (−1592/+183)-Luc or IFN-β (−1814/+11)-Luc for the promoter activity of TNF-α, iNOS or IFN-β gene40 (link)41 (link). Cells were transfected with each reporter construct in combination with Renilla control vector using a lipofectamine kit (Invitrogen, Carlsbad, CA, USA). Cell extracts were subjected to dual-luciferase assay (Promega, Madison, WI, USA). Firefly luciferase activity as the reporter was normalized to Renilla activity as a reference for transfection efficiency.
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6

MITF-M and TYR Promoter Regulation

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B16F0 cells were transfected with plasmid construct encoding firefly luciferase reporter fused to the promoter region of MITF-M (MITF-M-Luc) or that of TYR (TYR-Luc) along with Renilla control vector using lipofectamine kit (Invitrogen, 11668), and incubated for 48 h. The cells harboring each reporter plasmid were stimulated with 100 nM α-MSH in the presence of BI2B for 20 h, and harvested for dual-luciferase assays (Promega, E1910). The promoter activity of MITF-M or TYR was measured by Firefly luciferase activity, and normalized by Renilla luciferase activity, indicating the transfection efficiency.
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7

Regulation of MMP-9 Promoter by SOX5

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The luciferase constructs containing the 2-kb promoter of MMP-9 gene were previously described (11 (link)). The putative SOX5-binding site from −1,300 to −900 was deleted by using the Quick Change II site-directed mutagenesis kit (Stratagene, Cedar Creek, TX, USA) as previously described (11 (link)). MH7A cells were seeded on 24-well plates at 2 × 105 cells/well and transfected with Ad-SOX5 or Ad-EGFP for 48 h. After overexpression of SOX5, 1 µg of full-length promoter/luciferase fusion plasmid DNA or the plasmid that deletion of SOX5-binding site was transfected into MH7A by Lipofect-AMINE kit (Invitrogen), respectively. 100 ng of pRL-SV40 control vector (Renilla luciferase) was co-transfected as an internal control for transfection efficiency. Luciferase activity in cell lysates was measured after 24 h with a dual luciferase reporter assay (Promega).
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8

Dual Luciferase Assay for MITF-M and TYR

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B16F0 cells were transfected with luciferase reporter construct, MITF-M-Luc or TYR-Luc, using lipofectamine kit (Invitrogen, 11668). Renilla control vector was co-transfected as a reference of transfection efficiency. Lysates of transfected cells were subjected to dual luciferase assays (Promega, E1910). Firefly luciferase activity, indicating the promoter activity of MITF-M or TYR, was normalized to Renilla luciferase activity.
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9

Maintaining and Transfecting HUVEC Cells

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The HUVEC cell line (ATCC, Manassas, VA, USA) was maintained in Dulbecco’s modified minimal essential medium (DMEM, Life Technologies, Inc., Burlington, ON, USA) supplemented with 10% (v/v) fetal bovine serum (Life Technologies, Inc.), at 37°C, in a humidified atmosphere containing 95% air and 5% CO2. These cells were used throughout this study. For transfections, the cells were split the day prior to transfection to reach 70–80% confluence. Stable HUVEC cell transfectants expressing Cx43-NT were generated by transfection, respectively, with a Cx43-NT cDNA encoding plasmid using the Lipofectamine kit (Invitrogen Corporation, California, USA) and subsequent selection for G418 resistance according to the manufacturer’s instructions. Transfectants were tested by QPCR for Cx43-NT expression.
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10

Tyro and MITF-M Promoter Assay

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B16-F0 cells were transfected with the reporter construct, Tyro (−2236/+59)-Luc or MITF-M (−2200/+95), in combination with the Renilla control vector using a lipofectamine kit (Invitrogen, Madison, WA, USA). The cell extract was subjected to a dual luciferase assay with a premixed kit (Promega, Carlsbad, CA, USA). Firefly luciferase activity, reporting the promoter activity of the MITF-M or Tyro gene, was normalized to the Renilla activity as a reference of transfection efficiency.
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