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13 protocols using fl920

1

Time-Resolved Fluorescence Spectroscopy of R6G-Cdr1p Interaction

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The interaction of R6G with native Cdr1p was measured as described previously5 (link). Briefly, fluorescence lifetime decays and anisotropy decay measurements were made in time-correlated single photon counting (TCSPC) mode using an FL920 instrument (Edinburgh Instruments, Livingston, UK). The R6G in the sample was excited at 470 nm using a picosecond (ps) pulsed diode laser (pulse width ~85 ps; instrument response function, IRF, ~110 ps). The fluorescence lifetime decays at an emission wavelength of 555 nm were collected at the magic angle (54°) and at a parallel and perpendicular polarisation relative to the vertical polarisation of excitation. From the decays measured at parallel and perpendicular polarisation, the anisotropy decay incorporating the value of the instrumental G-factor was calculated using equation 1.

The interaction of R6G with native Cdr1p was measured by determining the time-resolved fluorescence and anisotropy decays of R6G, free in PBS and then bound to Cdr1p. The data were analyzed using IGOR-Pro software (Wave Metrics, USA). All fluorescence lifetime and anisotropy experiments were performed with purified PM from cells overexpressing Cdr1p (AD-CDR1) and with PM from host cells that did not express Cdr1p (AD1-8u).
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2

Spectroscopic Characterization of Samples

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UV-vis absorption and emission spectra were obtained by using the V0530 UV-VIS (Jasco) and RF-5301PC fluorescence spectrometer (Shimadzu), respectively, and fluorescence lifetimes were measured by using the time-correlated single-photon counting (TCSPC) method (FL920, Edinburgh Instruments).
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3

Fluorescence Anisotropy Assay for DNA Binding

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The binding of 3′-HEX-labeled DNA substrates by PolD and DP2 (1–1061) was determined by measuring the steady-state fluorescence anisotropy parameter using a spectrofluorometer equipped with polarizers (FL920, Edinburgh Instruments, Livingston, UK) in a cell thermostatically held at 25°C. The excitation and emission wavelengths were adjusted to 525 nm (2-nm bandpass) and 555 nm (20-nm bandpass), respectively. Titrations were performed in 20 mM sodium-succinate (pH 6), 100 mM NaCl by increasing concentrations of PolD up to 600 nM and DP2 (1–1061) up to 6 μM, to 5 nM of HEX-labeled DNA template. Details about steady-state fluorescence anisotropy calculation are mentioned in S1 Text.
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4

Optical Characterization of Calcium-Sensitive Dyes

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Absorption measurements were performed with a Lambda 750 UV/VIS spectrometer (Perkin Elmer, Waltham, USA). To determine the absorption coefficients, absorption spectra in Ca2+-free and Ca2+-saturated buffer solutions were recorded. The dye concentration varied from 1.7 µM to 12.5 µM for ACR and from 0.9 µM to 1.8 µM for ACG. Fluorescence quantum yields of the Ca2+-saturated dye forms were determined absolutely with the C 9929 integration sphere system (Hamamatsu, Hamamatsu City, Japan). Since the fluorescence quantum yields of the Ca2+-free dye forms were below the detection limit of this system (ΦF <0.01), fluorescence quantum yields of these dye forms were determined relative to the respective Ca2+-saturated form as a fluorescent reference [25] , [26] (link). Steady-state fluorescence spectra were recorded with FluoroMax 4 (Horiba, Kyoto, Japan). For time-resolved fluorescence measurements in the BSA-buffer, ACR was excited by a supercontinuum source (SC-400-PP, Fianium, Southhampton, UK) operating at λex = 550 nm with a repetition rate of 20 MHz and a pulse width of ∼30 ps. The laser beam was fiber-guided towards the fluorescence lifetime spectrometer FL920 (Edinburgh Instruments, Edinburgh, UK), where the emitted fluorescence was detected by a multichannel plate (ELDY EM1-123/300, EuroPhoton, Berlin, Germany) in the time-correlated single photon counting (TCSPC) mode.
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5

Fluorescence Lifetime Analysis of mAb Charge Variants

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The fluorescence lifetimes of the mAb charge variants at a concentration of 0.8 mg ml−1 were measured on a time-correlated single-photon counting (TCSPC) setup (FL920, Edinburgh Instruments, UK). The bevacizumab charge variants were excited with a wavelength of 280 nm using a light emitting diode, 200 ns FWHM with PPD and laser diode, and the respective decay profiles mAb charge variant were monitored at 337 nm at the magic angle (54.7 °C). A solution of colloidal silica (Ludox) was inserted into the buffer to acquire the instrument response function (IRF). The IRF was used to deconvolute the fluorescence time-resolved decay of the isolated charge variants. The decay times (Ʈ) were obtained by using Marquardt least-squares minimization and fitting a four-parameter fit to the decay profile of the charge variants. The decay function was assumed to be the sum of two exponentials given by the equation: Ft=iiexp(t/τi) where F(t) is the experimental intensity decay, i is the pre-exponential factor, and τi is fluorescence lifetime of the ith discrete component, both recovered upon fitting.
The fractional intensity (fi) of each lifetime and the mean lifetimes < τi > are given by Eq. (3) and (4), as follows: fi=iτiiiτi τi=ifiτi
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6

Characterization of Nitrogen-Doped Carbon Dots

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The morphology and lattice distance of N-CDs were investigated by transmission electron microscopy (TEM). A Tecnai G2 F30 S-Twin system (FEI, Netherlands) and H-7650 system (Hitachi, Japan) installed in the Center for University-wide Research Facilities (CURF) at the Jeonbuk National University. X-ray diffraction (XRD) was performed on a Miniflex Benchtop X-ray diffractometer (Rigaku). The chemical functional groups and composition of the N-CDs were investigated by Fourier-transform infrared (FTIR) spectrometry (Nicolet 6700, Thermo, USA) and X-ray photoelectron spectrometry (XPS, K-Alpha+, Thermo Fisher Scientific, USA), respectively. Absorption and fluorescence spectra of the N-CDs were recorded on a UV-Vis spectrophotometer (Lambda 1050, PerkinElmer) and fluorescence spectrometer (QM-400, HORIBA), respectively. The fluorescence lifetime was measured using a fluorescence lifetime spectrometer (FL920, Edinburgh Instruments, United Kingdom).
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7

Fluorescence Emission Spectrum Analysis

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The PSi/C-dot hybrid's fluorescence emission spectra were recorded at different excitation wavelengths using a spectrofluorimeter (FL920, Edinburgh Instruments, UK). The emission spectra were measured at different excitation wavelengths ranging from 300 to 600 nm.
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8

Characterization of Zn-Doped Nitrogen-Doped Carbon Dots

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The size and morphology of Zn:N-CD were examined by transmission electron microscopy (TEM, Hitachi, H-7650). The Zn content and crystalline structure of Zn:N-CD were analyzed by ICP-MS (NEXION-350X, PerkinElmer Korea) and X-ray diffraction (XRD, SmartLab, Rigaku, Japan), respectively. The chemical functional groups and composition of Zn:N-CDs were investigated by Fourier-transform infrared (FTIR) spectrometry (Nicolet 6700, Thermo, USA) and X-ray photoelectron spectroscopy (XPS, K-Alpha+, Thermo Fisher Scientific, USA), respectively. The absorption and fluorescence spectra of Zn:N-CDs were recorded using a UV-vis spectrophotometer (Lambda 1050, PerkinElmer) and fluorescence spectrometer (QM-400, HORIBA), respectively. The fluorescence lifetime was measured using a fluorescence lifetime spectrometer (FL920, Edinburgh Instruments, United Kingdom).
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9

Multimodal Characterization of Materials

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Powder X-ray diffraction measurements were conducted on a Philips diffractometer (X’pert pro MRD) using Cu Kα radiation. The SEM tests were performed by using a Zeiss Gemini SEM 300 field-emission scanning electron microscope. The PL spectra were measured using an Edinburgh FL920 with a Xenon lamp, with the excitation wavelength at 460 nm. TRPL at 810 nm was monitored under a 478 nm light pulse as excitation from the HORIBA Scientific Delta Pro fluorimeter. For the μτ, IV, It measurements, the Keithley 6571B Source Meter was used to apply the bias voltage and record the response current. A 365 nm LED light (model M365L, Zolix, Beijing) was used as the excitation source for μτ measurement. The power of 365 nm light was 420 mW. A rotational viscometer (Model NDJ−5s, purchased from LICHEN, shanghai.) was used to test the viscosity of suspensions at 30 rpm.
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10

Fluorescence Lifetime and Anisotropy Measurements

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TRFS was done using FL920 Edinburgh spectrofluorimeter which was equipped with a xenon arc lamp, a polarizing device and a 375-nm laser diode (NanoLED 375 L, Horiba Ltd.) operated with a pulse frequency of 1 MHz. During the experiment photobleaching was avoided by using extremely low power (6–7 μW).
Decays in nanosecond timescales of DPH were measured in time correlated single photon counting (TCSPC) setup (FL920, Edinburgh Instruments, UK). Samples were excited at 375 nm using picosecond diode laser (pulse width ~100 ps). Fluorescence were dispersed in a monochromator and then collected by a MCP-PMT detector. The time-resolution of TCSPC setup of ~100 ps was determined by measuring the Instrument Response Function (IRF) using LUDOX solution. DPH labeled cells were placed in a quartz cuvette. Fluorescence was emitted at 426 nm and the time 100 ns was split into 4096 channels. Decay was measured at magical angle for 5000 peak counts. The G factor was determined by measuring IHH and IHV between the ranges 400–600 nm at five repeats. The anisotropy decay was determined by convolving the IVH and IVV.
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