The largest database of trusted experimental protocols

20 protocols using image gauge v4

1

Western Blot Image Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
All signal intensities of Western blotting images were analysed using imaging software (Image Gauge v4.21; Fujifilm) with the default manufacturer’s procedure. Briefly, the same size of pixel area was selected and signal intensity calculated by subtraction of the background signal. Each signal was normalised with reference to standard control signals, e.g. tubulin, and a signal to control ratio was calculated.
+ Open protocol
+ Expand
2

Cytokine Profiling in Mouse Lung Models

Check if the same lab product or an alternative is used in the 5 most similar protocols
Four mice from each experimental group (PBS, BLM, and BLM-UNC0379) were used in a cytokine array. At 10 dpi of PBS or BLM, the trachea was exposed and lavaged three times with 1.2 ml ice-cold PBS using a 20-gauge catheter. After centrifuging the BAL fluid at 400 × g for 5 min, the resulting supernatants were stored at −80°C as samples for use in the cytokine array. The cell pellets were resuspended in PBS and stained with Diff-Quick (Sysmex Co., Kobe, Japan) for cell counting using a hemocytometer. For the cytokine array, the BAL fluids from two mice form each group were collected, mixed, and subjected to Proteome Profiler Mouse Cytokine Array Kit for 40 cytokines (ARY006; R&D systems, Inc., Minneapolis, MN). The WB cytokine array was performed twice according to the manufacturer’s instructions. The resulting signals for each cytokine were normalizing to the positive internal control included in the array membrane and evaluated using an Image Gauge V4.21 (FUJIFILM).
+ Open protocol
+ Expand
3

Quantitative Southern Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Radioactive signal on Southern blots was quantified by phosphorimaging (Typhoon FLA-9500) and analyzed using Image Gauge v4.22 (FujiFilm). Statistical and other data analysis was performed using Graphpad Prism and R (https://www.R-project.org/). Plots of individual tetrad genotypes were constructed using the R packages tidyverse and ggplot2 (Wickham, 2009 (link); Wickham et al., 2019 (link)). For tetrad analysis, map distances were calculated as described (Perkins, 1949 (link)), implemented at https://elizabethhousworth.com/StahlLabOnlineTools/.
+ Open protocol
+ Expand
4

Ovary Lysate Preparation and Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ovary lysate was prepared as described (Li et al., 2009 (link)). Anti-Ago3 was a gift from Julius Brennecke. Quantification was performed using ImageGauge v4.22 (Fuji, Japan).
+ Open protocol
+ Expand
5

Quantifying HBV Encapsidated and Cytoplasmic pgRNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
An RPA was performed as described previously [43 (link)] to analyze the encapsidated and cytoplasmic pgRNA. Radiolabeled anti-sense probes (446 nucleotides (nts); nts 1805–2187 of HBV sequence) were synthesized in vitro; the protected sequence comprised 369 nts. The relative levels of cytoplasmic pgRNA and pgRNA obtained from isolated core particles were measured using the Fujifilm Image Gauge V4.0 program.
+ Open protocol
+ Expand
6

Immunofluorescent Adipocyte Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The method for immunofluorescene study of mouse adipose tissue was followed as described [22] (link). Adipocyte area was measured from each section using Image Gauge v4.0 software (Fujifilm). Frequency, histograms and Gaussian distributions were calculated using Excel 2013 (Microsoft) and GraphPad Prism v6.0 (GraphPad Software).
+ Open protocol
+ Expand
7

Visualizing Phosphate Absorption in Arabidopsis

Check if the same lab product or an alternative is used in the 5 most similar protocols
To visualize 33P absorption, 7-day-old Arabidopsis seedlings grown in high-phosphate medium were incubated for 1 day in liquid medium supplemented with 33P (400 Bq/mL) and exposed against an imaging plate (Fujifilm; Japan) for 4 days at -80°C. Radioluminographic images of the seedlings were then scanned using the FLA-5000 imaging analyzer (Fujifilm; Japan) and analyzed using Image Gauge v4.0 (Fujifilm; Japan).
+ Open protocol
+ Expand
8

Analyzing HBV DNA Synthesis by Southern Blotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
To analyze HBV DNA synthesis by Southern blotting, HBV DNA extracted from isolated core particles was separated by agarose gel electrophoresis and hybridized to a 32P-labeled random-primed probe specific for the full-length HBV sequence, as described previously [43 (link)]. The relative intensities of HBV double-stranded linear (DL) DNA were measured using the Fujifilm Image Gauge V4.0 program (Fuji Film Science lab 2001).
+ Open protocol
+ Expand
9

Quantification of Gel Radioactivity and Protein

Check if the same lab product or an alternative is used in the 5 most similar protocols
Phosphorimages of dried radioactive gels were quantified using Image Gauge v. 4.0 (Fujifilm). DNA intensities from EtBr stained gels and the intensity of RNAP subunits was quantified via ImageLab v. 5.2 (BioRad). The number of replicates (n) for experiments is indicated in the Figure legends. Data are plotted as means ± standard deviations.
+ Open protocol
+ Expand
10

Quantifying PFKFB3 and Nrf2 Levels

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed using RIPA buffer for 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 (PFKFB3) detection. To analyze nuclear factor erythroid 2-like 2 (Nrf2) levels, cytosolic and nuclear compartments were extracted first with cytosol extraction buffer containing HEPES (10 mM) pH 7.9, KCl (10 mM), EDTA (0.1 mM), 0.3% NP-40, and protease inhibitors and then with nucleus extraction buffer containing HEPES (20 mM) pH 7.9, NaCl (0.4 mM), EDTA (1 mM), 0.25% glycerol, and protease inhibitors. The cell lysate was subjected to Western blot analysis using anti-PFKFB3 antibody (Ab) (Abgent, San Diego, CA, USA), anti-Nrf2 Ab (Santa Cruz Biotechnology, Dallas, TX, USA), anti-actin Ab (Bethyl Laboratories Inc., Montgomery, TX, USA), or anti-lamin A/C Ab (Santa Cruz) as a primary Ab and horseradish peroxidase-conjugated anti-rabbit IgG Ab (Thermo Fisher Scientific) as a secondary Ab. Signals were detected using enhanced chemical luminescence (Amersham, Piscataway, NJ, USA). The immunoblot was digitized using an office scanner (UMAX Astra 4100, Taipei, Taiwan), and the intensity of the band of the expected molecular size was quantitated using Image Gauge V 4.0 (Fujifilm Corporation, Tokyo, Japan). The band intensity of PFKFB3 and cytosolic Nrf2 was normalized to actin, and nuclear Nrf2 was normalized to lamin.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!