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3 protocols using phospho p70 s6k t421 s424

1

Intracellular Signaling Pathway Analyses

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NIH 3T3 fibroblasts were obtained from ATCC (Manassas, VA) and maintained in DMEM (HyClone, Logan, UT) supplemented with 10% fetal bovine serum, 100 units/ml penicillin, and 100 µg/ml streptomycin in a 5% CO2 incubator at 37°C. Primary antibodies against phospho-AktS473, phospho-MekS217/221, Pan-Mek, phospho-S6 ribosomal protein235/236, phosphop-70S6KT421/S424, phospho-ERK1/242/44, phospho-4EBP37/46 and pan-Akt were purchased from Cell Signaling (Boston, MA). Primary antibodies against phospho-p70S6KSer411 were purchased from Abcam (Cambridge, MA). Bleomycin and primary antibodies against β-actin and fibronectin were purchased from Sigma (St. Louis, MO). Anti-collagen-I was purchased from Rockland (Gilbertsville, PA). All HRP-conjugated secondary antibodies were obtained from Bio-Rad (Hercules, CA) and Alexa-labelled secondary antibodies were purchased from Life Technologies (Carlsbad, CA). TGFβ was purchased from R&D (Minneapolis, MN), whereas LY294002 inhibitor, U0126 inhibitor, and Rapamycin were purchased from EMD Millipore Bioscience (San Diego, CA). PF4708671 inhibitor was obtained from Santa Cruz Biotechnology (Dallas, TX). Adenoviral particles encoding CA-Mek1 and DN-Mek1 were obtained from Cell Biolabs, Inc. (San Diego, CA), whereas retroviral plasmids encoding CA-Akt1 and DN-Akt1 were generated in the laboratory [6 (link)].
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2

Protein Quantification and Western Blot

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Tissue and cell extracts were normalized by measuring total protein concentration using Bio-Rad Dc protein Assay kit according manufacturer's protocol. Extracts were separated by SDS-PAGE, transferred on Immobilon-P membrane (Millipore) and incubated with phosphospecific and protein specific primary and secondary antibodies (Cell Signaling and Santa Cruz Biotechnoly). Due to technical difficulties, instead of stripping and re-probing the same membrane with different antibodies, several gels loaded with the same extracts were run in parallel; after staining with Ponceau S Red and visual examination of the transfer quality, one membrane was stained with phosphor-specific antibodies and another with antibodies specific for the total protein. Experiments with the same extracts were repeated independently at least two times. Following antibodies were used: Cell Signaling Technology: Phospho-p70 S6K (Thr389) #9205, Phospho-p70 S6K (T421/S424) #9204, p70 S6K #9202, Phospho-4E-BP1 (T37/46) #2855, 4E-BP1 #9452, Phospho-S6 (Ser235/236) 32211, Phospho-S6 (Ser240/244) #2215, Anti-Mouse IgG-HRP #7076, aAnti-rabbit IgG-HRP #7074. Santa Cruz Biotechnology: Robosomal Protein S6 sc-74459, Donkey anti-rabbit IgG-HRP sc-2313. Abcam: Anti-S6K1 (phosphor T389) ab2571.
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3

Protein Signaling Pathway Analysis

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Tissue and cell extracts were prepared in RIPA buffer with Protease/Phosphotase Inhibitor Cocktail, Cell signaling Technology (#5872) according to the manufacturer's protocol. Tissue and cell extracts were normalized by measuring total protein concentration using Bio-Rad Dc protein Assay kit according manufacturer's protocol. Extracts were separated by SDS-PAGE, transferred on Immobilon-P membrane (Millipore) and incubated with phosphospecific and protein specific primary and secondary antibodies. Following antibodies were used: Cell Signaling Technology: Phospho-p70 S6K (Thr389) #9205, Phospho-p70 S6K (T421/S424) #9204, p70 S6K #9202, Phospho-S6 (Ser235/236) 32211, Phospho-S6 (Ser240/244) #2215, Anti-Mouse IgG-HRP #7076, aAnti-rabbit IgG-HRP #7074. Santa Cruz Biotechnology: Robosomal Protein S6 sc-74459, Donkey anti-rabbit IgG-HRP sc-2313. Abcam: Anti-S6K1 (phosphor T389) ab2571.
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