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7 protocols using ab202063

1

Protein Expression Analysis by Western Blot

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Protein extraction was performed by washing the cell pellet with ice-cold PBS. Next, 1 mL of ice-cold RIPA lysis buffer (Sigma) and a protease inhibitor cocktail (Thermo Scientific, Rockford, IL, USA) were added and incubated on ice for 30 min. Then, 30 µg of cell lysates were resolved on 4–20% ExpressPluS PAGE Gel (GenScript, Piscataway, NJ, USA) following concentration measurements. The eBlot Protein Transfer device (GenScript, Piscataway, NJ, USA) was used to transfer the proteins onto a PDVDF Transfer Membrane (Thermo Scientific, Rockford, IL, USA). The membranes were washed and incubated for 1 h with a secondary anti-mouse antibody conjugated with HRP (Cell Signaling Technology, Danvers, MA, USA). Pierce ECL Western blotting Substrate (Thermo Scientific, Rockford, IL, USA) and BioRad Universal Hood II with a Chemiluminescence System (BioRad, Hercules, CA, USA) were used to visualize the result. Antibodies: Recombinant Anti-FANCD2 antibody [EPR2302] (abcam—ab108928) 1/1000; Recombinant Anti-Rad51D antibody [EPR16205] (abcam—ab202063) 1/1000; Recombinant Anti-β Actin antibody [EPR21241] (abcam—ab213262) 1 µg/mL; Recombinant Anti-Rad51D antibody [EPR16205] (ab202063) 1/1000.
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2

Chymotrypsin-Mediated RAD51 Complex Analysis

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BCDX2 (15 μM) was incubated for 4 hours at 37°C with and without chymotrypsin (1.5 μM) in HGMT buffer containing 150 mM NaCl, and 0.5 mM ADP.BeFx (0.5 mM ADP, 0.5 mM BeSO4 and 10 mM NaF). The samples were then gel filtered using a Superdex 200 Increase 3.2/300 GL column (Cytiva) equilibrated in HMT buffer (25 mM HEPES pH 7.5, 2.5 mM MgCl2, 0.25 mM TCEP) with 100 mM NaCl on a Micro-kit equipped ÄKTA pure. Fractions were taken and analysed on 5 SDS-PAGE gels. One was directly visualised with Quick Coomassie stain (Generon) and visualised on a ChemiDoc MP Imaging system. The others were analysed by western blotting with antibodies against RAD51B (Rabbit polyclonal, 1:1000 SWE32, this lab), RAD51C (Rabbit polyclonal, 1:1000, SWE6856 (link)), RAD51D (Rabbit monoclonal, 1:1000, Abcam ab202063) and XRCC2 (Rabbit polyclonal, 1:1000, SWE3556 (link)). Membranes were incubated with Alexa Fluor Plus 800 anti-rabbit secondary antibody (1:40,000, Invitrogen A32735) and imaged using an Odyssey DLx instrument with ImageStudio software (Licor).
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3

Ovarian Tissue Immunofluorescence Analysis

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Immunofluorescence (IF) was carried out on ovarian tissue sections as follows. Briefly, after fixation with 4% paraformaldehyde for 12 h, according to the standard histological procedures the ovarian pieces were processed for paraffin sectioning. Serial 5µm sections were heated at 60 °C for 2 h. After this the slides were rehydrated with a series of graded ethanol and washed with PBS 0.01 M sodium citrate were used for antigen retrieval at 95°C. After blocking for 1 hr with 10% BSA, the slides were incubated overnight at 4 °C with primary antibodies, anti: VASA (Abcam, ab13840, USA), SCP3 (NOVUS, NB300-232), DAZL (Abcam, ab34139), ɤH2AX (Sigma, SAB4501369), RAD51 (Abcam, ab202063), MLH1 (Abcam, ab92312), diluted to optimal concentrations. After thoroughly rinsing with TBS, secondary antibodies (CY3, A0516, Beyotime; FITC, A0568, Beyotime, China) diluted 1:200 were applied at 37 °C for 1h in the dark. After washing three times with PBS, the samples were incubated with Hoechst33342 (Solarbio, China) and observed under a fluorescence microscope. Positive cells were scored as previously described [67 (link)]. Negative controls were performed omitting the primary antibodies after the blocking procedure (not shown).
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4

Chymotrypsin-Mediated RAD51 Complex Analysis

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BCDX2 (15 μM) was incubated for 4 hours at 37°C with and without chymotrypsin (1.5 μM) in HGMT buffer containing 150 mM NaCl, and 0.5 mM ADP.BeFx (0.5 mM ADP, 0.5 mM BeSO4 and 10 mM NaF). The samples were then gel filtered using a Superdex 200 Increase 3.2/300 GL column (Cytiva) equilibrated in HMT buffer (25 mM HEPES pH 7.5, 2.5 mM MgCl2, 0.25 mM TCEP) with 100 mM NaCl on a Micro-kit equipped ÄKTA pure. Fractions were taken and analysed on 5 SDS-PAGE gels. One was directly visualised with Quick Coomassie stain (Generon) and visualised on a ChemiDoc MP Imaging system. The others were analysed by western blotting with antibodies against RAD51B (Rabbit polyclonal, 1:1000 SWE32, this lab), RAD51C (Rabbit polyclonal, 1:1000, SWE6856 (link)), RAD51D (Rabbit monoclonal, 1:1000, Abcam ab202063) and XRCC2 (Rabbit polyclonal, 1:1000, SWE3556 (link)). Membranes were incubated with Alexa Fluor Plus 800 anti-rabbit secondary antibody (1:40,000, Invitrogen A32735) and imaged using an Odyssey DLx instrument with ImageStudio software (Licor).
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5

Western Blot Analysis of DNA Repair Proteins

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Whole-cell lysates were prepared using RIPA buffer (Sigma) containing protease inhibitor cocktail, and protein concentration was assessed by BCA colormetric protein determination (Pierce). Equal protein loads were resolved on precast 4% to 12% Bis-Tris gels under reducing conditions. Protein was transferred to nitrocellulose membranes using iBlot dry transfer method (Invitrogen), then probed with primary antibody anti-RAD51C (sc-398819 1:1,000; Santa Cruz Biotechnology), anti-RAD51D n-terminal (ab202063 1:1,000; Abcam), anti-RAD51D c-terminal (sc-398819 1:1,000; Santa Cruz Biotechnology), anti-GAPDH (#5174 1:1,000; Cell Signaling Technology), anti-tubulin (#2128 1:1,000; Cell Signaling Technology) or anti-actin (ab8229 1:1,000; Abcam) followed by peroxidase-labeled secondary antibody (sc-2020 1:5,000; Santa Cruz Biotechnology) and visualized by enhanced chemiluminescence (SuperSignal Chemiluminescent Substrate; Thermo Scientific) or IRDye-labeled secondary antibody (LI-COR Biotechnology) according to the manufacturer's instructions. Band volume analysis was conducted using Odyssey Fc (LI-COR Biotechnology).
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6

Immunohistochemical Analysis of DNA Damage Markers

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Antigen retrieval was performed on the FFPE sections using citrate buffer (0.1 mol/L, pH 6.0) with a steamer. Serial 4 µm sections were incubated with primary antibodies (RAD51, sc-398587,1:250, Santa Cruz; γ-H2AX, ab22551,1:200, Abcam) at 4 °C overnight. Subsequently, the samples were probed with a secondary antibody. Finally, the samples were mounted with DAPI-containing mounting medium (S36973, Thermo Fisher, Waltham, MA, USA). Images were captured with a fluorescence microscope (Leica, Wetzlar, Germany) with Leica Application Suite V4 software and edited with Photoshop (Adobe, USA).
Serial 4 µm sections were incubated with primary antibodies (RAD51D, ab202063, 1:250, Abcam, Cambridge, MA, USA) overnight at 4 °C. Sections without primary antibody incubation were used as negative controls. Goat anti-mouse horseradish peroxidase–conjugated secondary antibody was used. The chromogenic reaction was performed with DAB.
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7

Immunoblotting for RAD51D Protein Quantification

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Total soluble protein extraction and immunoblotting were performed as previously described [62 (link)]. For RAD51D detection, a polyclonal antibody (#ab202063, Abcam, US) was used at a 1:1000 dilution. Mouse monoclonal anti-vinculin (#V9131, Sigma, US) at 1:200,000 dilution was used as the loading control. Horseradish peroxidase-conjugated anti-rabbit IgG or anti-mouse at 1:10,000 dilution (Jackson Immuno Research, US) was used as secondary antibodies.
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