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5 protocols using mitomycin c

1

Tailocin Purification from P. syringae

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Tailocin was prepared and quantified from supernatants of P. syringae pv. syringae B728a as previously described (34 (link), 56 (link)). Overnight cultures of B728a were diluted 1:100 in King’s B medium and grown for 3 h at 28°C, and tailocin production was induced by the addition of mitomycin C (MP Biomedicals LLC, Solon, OH) to a concentration of 0.5 μg ml−1. After a 24-h induction, supernatants were collected by centrifugation. Residual live cells were killed by treating the supernatant with chloroform. The aqueous phase was collected by centrifugation and then amended with NaCl and polyethylene glycol 8000 (PEG 8000) to final concentrations of 1 M and 10%, wt/vol, respectively. After 1 h of incubation on ice, the supernatant mixture was centrifuged at 16,000 × g for 30 min at 4°C. The resulting tailocin pellet was dissolved in 10 mM Tris (pH 7.0) and 10 mM MgSO4. Residual PEG 8000 was removed by two extractions with equal volumes of chloroform. The activity of prepared tailocin was evaluated by spotting 5-μl serial dilutions onto soft agar overlay plates seeded with Pph. Tailocin activity is expressed in activity units (AU) derived from the highest dilution factor resulting in a visible inhibition zone (57 ).
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2

Genotoxicity Assay Protocols

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For the genotoxicity studies, positive controls were acquired from Sigma Aldrich (2-aminoanthracene, 9-aminoacridine, sodium azide, and cyclophosphamide monohydrate), Tokyo Chemical Industry (2-nitrofluorene), and MP Biomedicals (mitomycin C). Fetal bovine serum (FBS) was procured from Gibco. RPMI-1640 media was procured from MP Biomedicals. Salmonella strains were procured from Moltox, USA, and S9 fractions were prepared fresh, in-house.
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3

Tailocin Isolation and Quantification

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Tailocin was prepared and quanti ed from supernatants of Psy B728a as previously described (32, 54) (link). Overnight cultures of B728a were diluted 1:100 in King's B, grown for 3 hours at 28 °C, and tailocin production was induced by addition of mitomycin C (MP Biomedical LLC, Solon, Ohio) to a concentration of 0.5 µg mL -1 . After 24h induction, supernatants were collected by centrifugation. Residual live cells were killed by treating supernatant with chloroform. The aqueous phase was collected by centrifugation, then amended with NaCl and Polyethylene glycol 8000 to nal concentrations of 1M and 10% w/v, respectively. After 1h incubation on ice, the supernatant mixture was centrifuged at 16,000 x g for 30 minutes at 4 °C. The resulting tailocin pellet was dissolved in 10 mM Tris (pH 7.0) and 10 mM MgSO 4 .
Residual PEG 8000 was removed by two extractions with equal volumes of chloroform. The activity of prepared tailocin was evaluated by spotting 5 µl serial dilution onto soft agar overlay plates seeded with Pph. Tailocin activity was expressed in activity units (AU) derived from the highest dilution factor resulting in a visible inhibition zone (55) .
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4

Flow Cytometry for Immune Cell Analysis

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The following flow cytometry antibodies used in this experiment were purchased from BD Biosciences, eBioscience, or BioLegend. FITC: CD4 (Clone: RM4-5), H-2 b (Clone: AF6-88.5.5.3); PE: Foxp3 (Clone: FJK-16s), CD226, (Clone: 10E5); PerCp-Cy5.5: CD4 (Clone: GK1.5); APC: CD25 (Clone: PC61.5), H-2 b (Clone: AF6-88.5.5.3), CD155 (Clone: TX56), and CD226 (Clone: 10E5). Other reagents used in this experiment were anti-mouse CD226 functional grade (Clone: 10E5, eBioscience, Cat #: 16-2261), rat IgG2b κ isotype control functional grade purified (eBioscience, Cat #: 16-4031), BrdU cell proliferation ELISA (Roche, Cat #: 11647229001), Carboxyfluorescein succinimidyl ester (CFSE) cell proliferation kit (Thermo Fisher, Cat #: C34544), Mitomycin C (MP Biomedicals, Cat #: 02194532), Dynabeads mouse T activator CD3/CD28 (Thermo Fisher, Cat #: 11452D), and mouse CD4 + CD62L + T cell isolation kit (Miltenyi, Cat #: 130-106-643). Mouse CD226-Fc recombinant protein was custom made by Chimerigen (Taizhou, China, Lot #: CHI-MF-111CD226-C500).
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5

Mouse iPS Cell Culture Protocol

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The mouse iPS cell line iPS-MEF-Ng-20D-17 (APS0001; RIKEN Bioresource Center, Japan) used in this study expresses GFP under the control of the Nanog promoter 8) . Undifferentiated cells express Nanog, but its expression disappears with differentiation 8, 9) . Gelatin from porcine skin (Sigma-Aldrich, USA) was added as a 0.1% aqueous solution to a cell culture dish (Becton Dickinson Labware, USA) and incubated at 37°C for 30 minutes, and a gelatin coat was applied to the culture dish. EmbryoMax ® Primary Mouse Embryo Fibroblasts (MEFs; Millipore, USA) treated with mitomycin C (Kyowa Hakko Kogyo Co., Ltd., Japan) were seeded in gelatin-coated culture dishes. The iPS cell line was seeded on mitomycin C-treated MEFs and cultured in ES medium [15% fetal bovine serum (FBS; MP Biomedicals, USA), 1% non-essential amino acids (Millipore, USA), 1% nucleosides (Millipore, USA), and 1% Dulbecco's modified Eagle's medium (Wako Pure Chemical Industries, Ltd., Japan) containing 1% L-glutamine (MP Biomedicals, USA), 500U/mL ESGRO ® Mouse Lukemia Inhibitory Factor (LIF; Millipore, USA), 2(β)-mercaptoethanol (Sigma-Aldrich, USA), and 1% penicillin-streptomycin (Millipore, USA)]. The medium was exchanged every day. iPS cells were passaged once every 2-3 days. For the dispersion of iPS cells, 2.5 g/L trypsin EDTA solutions were used.
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