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9 protocols using p erk1 2

1

Evaluation of Osteogenic Differentiation

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After incubating the G/SWCNT hybrids for 14 days, the cells were washed with PBS and harvested using the lysis buffer. Total protein was separated by 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes (EMD Millipore, Billerica, MA, USA). After washing three times, the membranes were incubated with the corresponding primary antibodies in Tris-buffered saline, 0.1% Tween 20 containing 1% bovine serum albumin solution overnight at 4°C, followed by incubation with secondary antibodies (Proteintech, Rosemont, IL, USA) for 60 minutes. The expressions of runt-related transcription factor 2 (Runx2; Proteintech), osteocalcin (OCN; Abcam, Cambridge, MA, USA), osteopontin (OPN; Abcam), peroxisome proliferator-activated receptor-γ2 (PPARγ2; Abcam), p38 (Epitomics, Burlingame, CA, USA), p-p38 (CST, Danvers, MA, USA), c-Jun-NH2-terminal kinases (JNK; CST), p-JNK (CST), ERK1/2 (Bioworld, Minneapolis, MN, USA), and p-ERK1/2 (Bioworld) were visualized using an enhanced chemiluminescence detection system (Beyotime).
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2

Protein Expression Analysis in Differentiated HL-60 Cells

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Total protein was extracted from differentiated HL-60 cells and neutrophils that were stimulated with GC-MSCs CM for different times. Equal amounts of proteins were separated by 12% SDS-PAGE and immunoblotted with antibodies against Bax, p-ERK1/2, ERK1/2 (Bioworld, Nanjing, China), cleaved Caspase-3, Bcl-2, p-STAT3, STAT3 (Cell signaling technology, Shanghai, China), and GAPDH (CWBIO, Beijing, China), followed by the secondary goat anti-rabbit or goat anti-mouse antibodies (Bioworld). Detection was performed using the ECL kit (Applygen Gene Technology, Beijing, China).
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3

Protein Extraction and Western Blotting

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Cells were harvested with RIPA lysis buffer containing 0.5% NP-40, 150 mM NaCl, 1 mM EDTA (pH 8.0), 50 mM Tris-HCl (pH 8.0), and protease inhibitors. Protein extracts were quantified and separated by electrophoresis on a 15% SDS–PAGE gel. Primary antibodies including HIF1α (1:1000, NB100–105, Novus, Littleton, CO, USA), HIF2α (1:500, NB100–132, Novus), GAPDH (1:10,000, SC32233, Santa Cruz Biotechnology, Santa Cruz, CA, USA), α-tubulin (1:10,000, bs1699, Bioworld, Dublin, OH, USA), GSK3β (1:1000, Cell Signaling Technology, 9332, Danvers, MA, USA), p-GSK3β (1:1000, Cell Signaling Technology, 9336), ERK1/2 (1:1000, bs1112, Bioworld), and p-ERK1/2 (1:1000, bs4621, Bioworld) were used. The secondary antibodies used were goat anti-mouse (1:10,000, 31,439, Pierce, Rockford, IL, USA) and goat anti-rabbit (1:10,000, Sigma-Aldrich).
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4

Characterizing Growth Factor Signaling

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The cell culture media 1640 and McCoy S 5A were purchased from Gibco (Gibco, USA). The rabbit or mouse monoclonal anti-human antibodies used were ARNO (Abcam, ab56510), pEGFR (Py1068, Epitomics, 1138-1), pERK1/2 (T202/Y204, Bioworld, BS5016), EGFR (Cell Signaling, 3197), GAPDH (Bioworld, AP0063), IGF-IR (Abcam, ab39675), pIGF-IR (Abcam, ab39398), pIRS (Abcam, ab52167), pAKT (Abcam, ab106693), pIRS1 (Abcam, ab66153), pShc (Abcam, ab155170), and Ki-67(Cell Signaling, 9027). Other reagents and equipment used were as follows: SecinH3 (Merck-565725/sc-203260), siRNA oligo (Genephama), MTT (sigma, m5655), DMSO (sigma, D5879), human EGF (Peprotech, AF-100-15), human IGF-1 (Peprotech, AF-100-11), FBS (Gibco, USA), and 0.25% trypsin (Sigma), immunohistochemical kit(Zhongshan,China).
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5

Molecular Mechanisms of HMGB1 Signaling

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The following reagents were used: rHMGB1 (Cat No. #1690-HMB-050, R&D Systems, Minneapolis, MN, USA), G1 (Cat. No. 3577/10, TOCRIS, Bioscience, Bristol, UK), G15 (Cat. No. 3678/10, TOCRIS, Bioscience, Bristol, UK). E2, TAM, were obtained from Sigma–Aldrich (St. Louis, MO, USA). U0126, and the LY294002 were purchased from Millipore (Temecula, CA, USA). E2 was dissolved in ethanol and other drugs were solubilized in dimethyl sulfoxide (DMSO; Sigma–Aldrich). The following antibodies were used: anti-HMGB1 neutralizing antibody (Cat No. H00003146-M08, R&D systems, Minneapolis, MN, USA); p-ERK1/2 (Cat No. AP0484P, diluted 1:1000), ERK1/2 (Cat No. BS90472, diluted 1:1000), Akt (Cat No. BS6473, diluted 1:1000) were purchased from Bioworld (St Louis Park, MN, USA). p-Akt (Cat No. 4060, Cell signaling Technology, USA, diluted 1:1000), LC3B (Cat No. 2775 Cell Signaling Technology, diluted 1:1000), P62 (Cat No. 5114, Cell Signaling Technology, diluted 1:1000); Beclin1(Cat No. 210498, diluted 1:1000), GPR30 (Cat No. ab39142, diluted 1:250), HMGB1 (Cat No. ab18256, diluted 1:500), Bcl-2 (Cat No.32124, diluted 1:1000), BAX (Cat No. 182734, diluted 1:1000) were purchased from Abcam (Cambridge, MA, USA), and β-actin (Cat No. TA-09, diluted 1:1000) from Zhongshan Golden Bridge (Beijing, China).
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6

Inflammatory Response Modulation by Natural Compounds

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GE (Figure 7A) and SIN (Figure 7B) (purity > 98.0%) were provided by the National Institute for the Control of Pharmaceutical and Biological Products (Beijing, China). The enzyme-linked immunosorbent assay (ELISA) kits for IFN-γ, IL-17, IL-4 and TGF-β1 were supplied from Elabscience Biotechnology Co., Ltd. (Wuhan, China). Rabbit mAb JNK, p-JNK, ERK1/2, p-ERK1/2, p38, p-p38, and β-actin were obtained from Bioworld Technology Inc. (Nanjing, China). HRP-conjugated goat anti-rabbit antibodies were purchased from ZSGB-BIO (Beijing, China). JNK inhibitor (SP600125), ERK inhibitor (PD98059), and p38 inhibitor (SB203580) were obtained from Calbiochem-Novabio chem Corp. (San Diego, CA, USA). Lipopolysaccharide (LPS), Cell counting kit-8 (CCK8) and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) were offered from Sigma Chemical Co. (St. Louis, MO, USA); Dulbecco’s modified Eagle’s medium (DMEM) was purchased from Thermo Scientific Co. (Waltham, MA, USA). All other chemicals used in this study were of analytical grade and were obtained from commercial sources.
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7

Epigenetic Regulation of Cell Lines

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Human HCC cell lines (HepG2, PLC/PRF/5, Bel-7402, SMMC-7721, HBXF-344, SNU-387, and SNU-449), human pancreatic cancer cell lines (PANC 504, SW1990, MIAPaCa-2, PANC-1), and human embryo liver cell line L02 were grown as described [27 (link), 28 (link)] in RPMI 1640 (Invitrogen, Carlsbad, CA, USA) with 10% fetal bovine serum (FBS; Hyclone, Logan, UT). The cells were split to low density (30% confluence) for overnight culture and were then treated with 2 μM of 5-AZA (Sigma-Aldrich) for 96 h with the medium exchanged every 24 h or with 4 μM of trichostatin A (TSA) (Sigma-Aldrich) for 24 h. For combined treatment, the cells were initially exposed to 5-AZA for 72 h followed by 5-AZA and TSA for 24 h.
The primary antibodies were used against the following proteins for Western blot: PRSS3 from R&D Systems (Cat. no.: MAB3710); p-MEK1/2 from Cell Signaling Technology (Cat. no.: 9121); cyclin D1 from Proteintech Group, Inc. (Cat. no.: 60186–1-Ig); and cyclin-dependent kinase 2 (CDK2), CDK4, cyclin E1, matrix metallopeptidase 2 (MMP2), MEK1/2, ERK1/2, p-ERK1/2, and β-actin from Bioworld Technology, Inc. (Cat. nos.: BS1050, MB0027, BS1085, BS1236, BS3599, BS1112, BS5016, and BS6007M, respectively).
All oligonucleotide sequences are listed in Supplementary Table 1.
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8

MTT Assay for Apoptosis Study

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Ph, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) and dimethylsulfoxide (DMSO) were purchased from Sigma Chemical Co. Dulbecco's modified Eagle's medium (DMEM) and fetal bovine serum (FBS) were obtained from Life Technologies. FITC-Annexin V/PI apoptosis detection kit was purchased from BD Biosciences. Ph stock solution was prepared into 50, 100 and 200 µM concentrations in DMSO and stored at -20°C. The final concentration of DMSO for all treatments was consistently <0.1%. Specific inhibitors for JNK1/2 (SP600125), ERK1/2 (U0126) or P38 (SB202190) were purchased from Calbiochem. The following antibodies were used: JNK1, p-JNK1/2 (Cell Signaling), P53, cleaved caspase-3, caspase-9, NF-κB, MMP-9 (Santa Cruz), P38, p-P38, ERK1/2, p-ERK1/2, Bcl-2, Bax and PARP (Bioworld Technology), and GAPDH (Sigma).
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9

Molecular Mechanisms of Anticancer Drug Resistance

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Afatinib, adriamycin and cisplatinum were purchased from Meilun Biology Technology Co., Ltd (Dalian, China). Paclitaxel was obtained from Tianfeng Technology Co., Ltd (Xi'an, China). Rhodamine 123, MTT, verapamil, lipopolysaccharide (LPS), PDTC, LY294002 and other chemicals were purchased from Sigma Chemical Co. (St. Louis, MQ, USA).
The monoclonal antibody against ABCB1 was obtained from Santa Cruz Biotechnology Inc. (CA, USA). Antibodies against iκBα, p-iκBα, p65 and Lamin B1 were purchased from Epitomics, Inc. (California, USA). Antibodies against EGFR, p-EGFR, HER-2, p-HER-2, AKT, p-AKT, p38, p-p38, ERK1/2, p-ERK1/2, JNK, p-JNK and GAPDH were obtained from Bioworld Technology, Inc. (Minnesota, USA). The HRP-conjugated goat anti-rabbit secondary antibody and the CY3-conjugated goat anti-rabbit secondary antibody were purchased from Abcam Inc. (Cambridge, MA, USA).
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