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35 protocols using ab48508

1

Immunostaining of 8-OHdG in hPMECs

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hPMECs on 6-chamber slides were treated and fixed with 4% paraformaldehyde at 4°C for 15 min and then permeabilised with 0.2% Triton X-100 in PBS at room temperature (RT) for 15 min. Cells were then incubated with primary antibodies against mouse 8-hydroxy-2’-deoxyguanosine (8-OHdG) (1:200) (ab48508, 1:200 dilution; Abcam, Cambridge, United Kingdom) at 4°C overnight. Subsequently, 100 µL/well working solution of goat anti-mouse secondary antibodies (1:300) was added and incubated at room temperature for 90 min. Then cells were stained with avidin-biotin-peroxidase complex and visualised with DAB. The stained slides were photographed using an inverted microscope (Olympus, Tokyo, Japan) at 200 × magnification.
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2

Measuring Mitochondrial Oxidation and DNA Damage

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MitoSOX™ Red (Thermo Fisher) was used according to manufacturer instructions to assess mitochondrial oxidation by superoxide in live cells using confocal microscopy [45 (link)] or flow cytometry. Alternatively, cells were immunostained with mouse monoclonal 8 hydroxy 2′ deoxyguanosine (Abcam #ab48508) as a measure of oxidative damage to DNA. Images were acquired using confocal or light microscopy.
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3

Immunohistochemical Detection of 8-OHdG

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Paraffin-fixed liver, kidney, and lung slices were sectioned, deparaffinized, and rehydrated, and antigen retrieval was performed with Dako retrieval solution (pH 6) in a microwave oven for 30 minutes. Dako peroxidase-blocking solution was used to block endogenous peroxidase activity for 10 minutes. Dako protein-blocking solution was used to block aspecific protein binding, and tissues were treated with mouse polyclonal anti-8-OHdG (1:500, N45.1, ab48508; Abcam, Cambridge, UK). Subsequently, these were incubated with biotinylated goat antimouse (1:30, D 0314; Dako) immunoglobulins and later visualized with substrate chromogen (K3464; Dako), followed by hematoxylin and mounted with aqueous mount medium. The sections were dehydrated and placed under coverslips, viewed under microscopy, and images taken with differential interference contrast inverted microscopy equipped with micromanipulators.
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4

Immunostaining of 8-oxoG in DNA

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For staining of 8-oxoG in DNA, a previously published protocol was used with slight modifications (47 (link),48 (link)). In brief, 2 × 104 cells were seeded on 12 mm diameter coverslip in 24-well plates. After 24 h, cells were washed with ice-cold PBS, fixed in 4% paraformaldehyde (PFA) in PBS for 10 min. Cells were washed with PBS three times for 5 min each with agitation. Cells were then permeabilized with 0.4% Triton-X-100 in PBS, followed by three times washes for 5 min each. Cells were then treated with 2.5 mg/ml RNase A in PBS for 1 h at 37°C, followed by three PBS washes. Nuclear DNA was denatured by treating with freshly prepared 2 N HCl in distilled water for 10 min at room temperature, followed by three PBS washes. Cells were then incubated with mouse anti-8-oxo-dG antibody (ab48508, Abcam). Alexa Fluor 555 anti-mouse secondary antibodies were used. All images were acquired with Carl Zeiss confocal microscope LSM 780 at the Core Facility for Integrated Microscopy at University of Copenhagen. Fluorescence intensity was measured using Fiji software.
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5

Immunohistochemical Analysis of 8-OHdG in Skin

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Fresh skin tissues of ALC and MF were fixed with 4% formaldehyde and then embedded in paraffin. They were then cut fully, and immunohistochemical was performed using 5 μm-thick sections. Skin samples were stained with the immunoperoxidase affinity biotin method using an anti-8-hydroxy-2′-deoxyguanosine antibody (N45.1, ab48508, Abcam, USA, 1:50) overnight at 4 °C followed by an HRP-conjugated Goat anti-mouse IgG as a secondary antibody for 1.5 h. The antigen–antibody reaction was observed using 3,3-diaminobenzidine tetrahydrochloride (DAB) by incubating for 5 min at room temperature. Next, an alcohol gradient was used for dehydration, and neutral gum was used to seal the slices. Images were taken under a light microscope (ECHO, RVL-100-G, USA).
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6

Tissue Histopathology and Oxidative Stress

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Tissue was harvested and fixed in 10% neutral buffered formalin, dehydrated and infiltrated with paraffin and sectioned at 4 μm thickness. General structure was demonstrated by staining with the Hematoxylin-Eosin procedure (HHS-128, Sigma, St. Louis MO). Picrosirius red staining was used to identify collagen deposition (Polysciences #09400, Warrington PA). For immunohistochemistry, sections were pretreated to quench endogenous peroxidase (H2O2 in methanol) and endogenous biotin (Avidin-Biotin blocking kit, Vector Laboratories, Burlingame, CA). Oxidative damage was assessed with antibodies against 4-hydroxynonenal (ab485606, Abcam, Cambridge MA, 1:2000 dilution) and 8 Hydroxyguanosine (ab48508, Abcam, Cambridge MA, 1:100 dilution)
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7

Mechanistic Investigation of ER Stress

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TMBIM6 (MA1-41108, anti-mouse, Invitrogen), GRP78 (sc-376768, anti-mouse, Santa-Cruz Biotechnology, Dallas TX, USA), GADD153/CHOP (sc-575, anti-rabbit, Santa-Cruz Biotechnology), IRE1α (sc-390960, anti-mouse, Santa-Cruz Biotechnology), HA probe (sc-805, anti-rabbit, Santa-Cruz Biotechnology), cysteine sulfonate (ab176487, anti-rabbit, Abcam, Cambridge, UK), 4-HNE (ab46545, anti-rabbit, Abcam), 8-OHdG (ab48508, anti-mouse, Abcam), β-galactosidase (sc-377257, anti-mouse, Santa-Cruz Biotechnology), cleaved-caspase-3 (9664S, anti-rabbit, Cell signaling), and iNOS (ab3523, anti-rabbit, Abcam).
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8

Western Blot Protein Analysis Protocol

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We followed our previously described protocol [31 (link)]. Briefly, frozen tissue samples were homogenised in ice-cold lysis buffer and protein concentrations determined using a BCA protein assay kit (Sigma, Poole, UK). Lysates were mixed with 3 x SDS PAGE sample buffer, boiled for 5 min and allowed to cool to room temperature. Equal amounts of protein (30–50 μg) were separated by sodium dodecyl sulphate-polyacrylamide gel electrophoresis, using 7.5–12.5% polyacrylamide resolving gels, and transferred onto nitrocellulose membrane (Invitrogen, Paisley, UK), and subjected to immunoblot analysis. Membranes were blocked for 1 h at 25 °C in 5% milk diluted in Tris-buffered saline (TBS) and 0.1% Tween 20 and incubated with the following primary antibodies overnight at 4 °C: anti-p21 (Cell Signaling; #2947), anti-p16 (Abcam; ab51243), or anti-cGAMP (Abcam; ab48508). After washing and incubating with secondary antibodies, immunoreactive proteins were visualized by the ECL plus chemiluminescence system following the manufacturer's instructions (Amersham Biosciences, Bucks., UK). Protein bands were quantified using Image J software (National Institutes of Health, http://rsb.info.nih.gov/ij/). Protein loading was normalized against Poncaeu S staining [35 (link)]. The values are expressed as a percentage of the control lysate (100%) for each experiment.
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9

Immunohistochemical Analysis of Oxidative Stress and Proliferation Markers

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IHC was performed as in a previous study (Yukata et al., 2018 (link)). Briefly, sections were treated with sodium citrate (10 mM, 100°C) (for antigen retrieval) and H2O2 (10% in PBS) (for endogenous peroxidase inactivation). Next, the slices were blocked with 10% goat serum, and incubated overnight at 4°C using primary antibodies against β-galactosidase (ab203749, Abcam, Cambridge, UK), 8-hydroxy-2 deoxyguanosine (8-OHdG) (ab48508, Abcam, Cambridge, UK), Ki67 (ab15580, Abcam, Cambridge, UK), and PCNA (ab92552, Abcam, Cambridge, UK). Then, biotinylated goat anti-mouse or anti‐rabbit IgG (Sigma, Ohio, USA) were used to treat the slices, before they were incubated with Vectastain Elite ABC reagent (Fisher Scientific, Hampton, New Hampshire, USA) for 30 min. 3,3‐diaminobenzidine was used for staining, followed by counterstaining with hematoxylin. 8-OHdG, Ki67, and PCNA are mostly expressed in the nucleus; p16 and β-galactosidase are expressed in both the nucleus and the cytoplasm. The positive cell rate for 8-OHdG, Ki67 and PCNA is the ratio of the number of positive nuclei to the number of all hematoxylin-labeled cells. The positive cell rate for p16 and β-galactosidase is the ratio of the number of positive nuclei or/and cytoplasm to the number of all hematoxylin-labeled cells.
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10

Myocardial Oxidative Stress Evaluation via IHC

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Immunohistochemistry (IHC) analysis was conducted to evaluate the oxidative stress-regulated damage in the myocardium. Antigen retrieval was performed in 10 mM citric acid buffer at 95°C for 10 min. After that, sections were incubated in 3% H2 (link)O2 (link) at 4°C for 10 min to eliminate endogenous peroxidase activity. The sections were then incubated with primary antibodies against 8−OHdG (10 μg/mL, ab48508, Abcam, Cambridge, UK) overnight at 4°C. After cleaning, the tissues were probed with secondary antibodies (ab97080, Abcam, 1:5000) at 37°C for another 30 min. Afterward, the sections were stained with a DAB to develop the color and were viewed under a light microscope (Eclipse Ci- L, Nikon, Japan) with 40× and 80× objective. Sections without the primary antibody were used as negative controls, and all immunohistochemistry experiments were performed with their respective negative controls. The positive expression rate of 8-hydroxy-2- deoxyguanosine (8-OHdG)=8-OHdG positive cell number/total cell number × 100.
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