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62 protocols using dmso dimethyl sulfoxide

1

Extraction of Brittle Star Metabolites

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The brittle star O. erinaceus were collected from Qeshm Island, Northern Persian Gulf, Iran and supplied kindly by Baharara's group. Extraction was done based on the method of Baharara et al. [26 (link)], with certain modifications by the different solvents. Specimens of brittle stars washed with water and dried in a dark room and then were ground. For extraction, the powder (10 g) of specimens was dissolved in 100 ml of ethanol 100% and was shaken for 72 h. The solvent was filtered through Whatman filter paper with a pore size of 0.4 μm. The solvent was removed using rotary evaporator. The resulting extract was placed in incubator (FanAzma Gostar, Iran) until all the ethanol evaporates then the extract stored at 4 °C in a refrigerator for future use. The extract was dissolved in DMSO, dimethyl sulfoxide, (Merck, Germany) to prepare the stock solutions for use.
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2

Neutrophil Migration and Signaling Assay

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Ficoll-Hypaque Plus was purchased from GE Healthcare (Milan, Italy; Cat. No. 17-1440-02). Dextran 500 (Cat. No. 31392), FITC isomer I (Cat. No. F7250), ethanol absolute (Cat. No. 02860), fMLP (Cat. No. F3506), agarose (Cat. No. A9045), RPMI-1640 (Cat. No. R6504), bovine serum albumin (BSA, Cat. No. A8022), bicinchoninic acid assay kit (Cat. No. BCA1) were purchased from Sigma-Aldrich (Milan, Italy). HES (Tetraspan) was obtained from BBraun (Melsungen, Germany). Fetal bovine serum (FBS) was purchased from Immunological Sciences (Rome, Italy; Cat. No. EU-000-500). DMSO (dimethyl sulfoxide) was purchased from Merck (Darmstadt, Germany; Cat. No. 1.09678.0100). IL-8 was purchased from Peptrotech (London, UK; Cat. No. 200-08M). Anti-CD11a (LFA-1; Cat. No. an3981), anti-CD11b (MAC-1; Cat. No. ab130428), and anti-CD18 (Cat. No. ab8220) blocking antibodies were purchased from Abcam (Cambridge, UK) and isotypic antibodies were from Santa Cruz Biotechnology (Dallas, TX, USA). Anti pAkt1/2/3 (Cat. No. sc515451), total Akt1/2/3 (Cat. No. sc81434), phosphorylated p38 (Cat. No. sc166182) and total p38 (Cat. No. sc33688) were from Santa Cruz Biotechnology (Dallas, TX, USA).
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3

Synthesis and Evaluation of PAMAMG4-Gold Nanocomposites

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Materials used in this study included methanolic solution of PAMAMG4 dendrimer and MMT (3- (4,5-dimethylthiazolyl-2)-2,5-diphenyltetrazolium bromide) obtained from (Sigma-Aldrich, USA). Hydrogen tetracholoroaurate (HAuCl4. 3H2O), sodium borohydride (NaBH4), sodium hydroxide, DMSO (dimethyl sulfoxide) and Whatman paper were purchased from (Merck. Germany). RPMI medium 1640, DMEM medium, fetal bovine serum (FBS), gentamicin, streptomycin, penicillin G, trypsin, EDTA were obtained from (Gibco, USA). MCF7 human breast cancer cells, 4T1 mice breast adenocarcinoma‏ cells, and C2C12 mice muscle normal cell were obtained from National Cell Bank of (Iran, Pasteur Institute, Tehran, Iran).
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4

Phytochemical Analysis and Bioactivity

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Arbutin (AR), gallic acid (GA), hydroquinone (HQ), (+)-catechin hydrate (CH), vanillic acid (VA), caffeic acid (CA), syringic acid (SA), (−)-epicatechin (EC), vanillin (VL), p-coumaric acid (PCA), trans-ferulic acid (FA), myricetin (MC), ellagic acid (EA), trans-cinnamic acid (TCA), rosmarinic acid (RA), benzoic acid (BA), quercetin (QU), rutin hydrate (RH), and kaempferol (KF) were purchased from Sigma-Aldrich (St. Louis, Missouri, United States). Acetonitrile (HPLC), methanol (HPLC), acetic acid (HPLC), ethanol, Folin-Ciocalteu's reagent, ascorbic acid, trichloroacetic acid, potassium ferricyanide, sodium carbonate, ferric chloride, DMSO (dimethyl sulfoxide), and acetic acid were obtained from Merck (Darmstadt, Germany). Diclofenac sodium and vincristine sulphate were obtained from Beximco Pharmaceuticals Ltd. and Cipla Pharmaceuticals India, respectively.
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5

Cytotoxicity Evaluation and Apoptosis Analysis

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Dulbecco’s Modified Eagle Medium (DMEM), Fetal Bovine Serum (FBS), (Gibco, Auckland, New Zealand), RPMI 1640 medium, Penicillin-Streptomycin, MTT (3- (4,5-dimethylthiazol-2-yl) -2,5-diphenyltetrazolium bromide), Phosphate-buffered saline (PBS) (Sigma, St. Louis, MO, USA), and DMSO (Dimethyl Sulfoxide) (Merck, Hohenbrunn, Germany), were used to evaluate the cytotoxic activity. Moreover, petroleum ether, dichloromethane, and methanol (Merck, Hohenbrunn, Germany) were used for plant fractionation. The NucView™ 488 Caspase-3 assay kit for live cells (Biotium, Hayward, CA, USA) and Annexin V-FITC Apoptosis Detection kit (BioVision Research Products, Mountain View, CA, USA) were used in apoptosis assays. Also we used 5-Flourouracil (5-FU) (Sigma, St. Louis, MO, USA) as the positive control.
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6

Quantifying Polyphenol Content in Essential Oils

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TPC of each EOs was determined according to the method of Folin-Ciocalteu (27 (link)). Concentration for gallic acid standard ranges from 20 to 1,000 μL and results were reported as GA equivalents (mg GAE/g). A total of 11 gallic acid standards were prepared. For the first standard, 1.5 mL Na2CO3, 0.5 mL Folin Ciocalteu's reagent (Merck 109001), 20 μL gallic acid (Sigma G7384) and 7,980 mL distilled water were added. Later, although Na2CO3 and Folin Ciocalteu's reagent remained constant in standards, the amount of gallic acid increased and the amount of water decreased. 20 μL of each EOs was dissolved in DMSO (dimethylsulfoxide, Merck, Germany) to yield maximum solubilization and homogenized with the same reagents. Afterwards, the samples were kept in the dark for 2 h at room temperature. The samples were then measured at 760 nm in a spectrophotometer (Shimadzu, UV 1800).
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7

Neuroprotective Potential of A5+ in Neuroblastoma Cells

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Murine neuroblastoma cell lines, N1E-115, were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA) and culture in Dulbecco’s Modified Eagle Medium (DMEM) (Gibco, Thermo Fisher Scientific, Waltham, MA, USA), supplemented with 10% heat-inactivated Fetal Bovine Serum (FBS) (Corning, NY, USA) and 100 U/mL penicillin/streptomycin (Thermo Scientific, Waltham, MA, USA). Cells were maintained at 37 °C in humidified air containing 5% CO2.
A5+ was provided by SirtLife srl, Rome, Italy. A5+ 10 µg is composed of ellagic acid (20%), polydatin (98%), pterostilbene (20%), honokiol (20%), mixed with recommended doses of zinc, selenium, and chromium. The polydatin and A5+ were dissolved in DMSO (dimethyl sulfoxide, Sigma Aldrich, Milan, Italy) at 1 mg/mL [22 (link)]. In order to establish the concentration of A5+ able to promote beneficial effect without exerting neurotoxic effect, N1E115 cells were treated with different concentrations (10, 50, 100 and 500 μM) for 48 h.
Neurotoxicity was induced by treating cells with different concentration (10, 30, 50, 75 and 100 μM) of 6-hydroxydopamine (6-OHDA) (Sigma Aldrich, Saint Louis, MO, USA) for 24 h.
Moreover, a combined treatment has been given: cells were pre-treated with A5+ for 48 h and then 6-OHDA was added in combination with A5+ for further 24 h.
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8

MTT Assay for Cell Viability Determination

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Cell viability was determined by using the MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) assay (Sigma Aldrich, Saint Louis, MO, USA), following manufacturer’s protocol. Briefly, 8 × 103 cells/well were seeded into a 96 multi-well plate for 24 h and treated with 6-OHDA and A5+ as reported above. Then, medium was removed and cells were incubated for 3 h at 37 °C with 5 mg/mL of MTT. After 3 h, DMSO (dimethyl sulfoxide) (Sigma Aldrich, Saint Louis, MO, USA) was added and the formazan production was assessed by measuring the absorbance at 570 nm.
Following cell viability assay, we also assessed the IC50 (50% inhibitory concentration), by using GraphPad Prism 9 (La Jolla, CA, USA), by using the MTT values on Y-axis and the log of concentration on the X-axis.
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9

Cytokine Expression Analysis in Curcumin Treatment

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The Middlebrook 7H9 and 7H10 media and the OADC (oleic acid, albumin, dextrose, and catalase) were obtained from Becton-Dickinson, (Detroit, MI, USA). The RNeasy® Mini Kit for RNA extraction, the Omniscript® Reverse Transcription Kit for complementary DNA acquisition, and the QuantiTectTM SYBR® for RT-PCR were obtained from Qiagen (Germantown, MD, USA). The primers for the cytokines studied were acquired from InvitrogenTM Thermo Fisher Scientific (Waltham, MA, USA). CUR, DMSO (Dimethylsulfoxide) and ethanol was purchased from Sigma Aldrich (Zwijndrecht, The Netherlands). Primary antibody against BDNF (ab72439) was obtained from Abcam Inc. (Cambridge, MA, USA). Primary antibody against Nrf2 (T-19; sc-30915) antibody was obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Secondary antibodies against rabbit (711-035-152), goat (705-035-147) and mouse (715-035-150) were purchased from Jackson ImmunoResearch Laboratories Inc. (Jennersville, PA, USA). All other reagents were analytical grade and acquired from known commercial sources.
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10

Chemokine Modulation by Synthetic Peptides

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Peptides were synthesized at the Weizmann Institute of Science in Rehovot, Israel to perform characterization tests on their ability to influence the biological activity of chemokines. The format of the various synthesized peptides was as follows: Cyclic peptides (ACX7CGGGSK-biotin-G) and linear peptides (X12GGGSK-biotin-G) were used. The peptides were biotinylated at their C-termini; biotin served as the detector during the subsequent experiments. Each synthetic peptide was dissolved to a final concentration of 1 mg/ml (~0.6 mM) in 4% DMSO (dimethyl sulfoxide, Sigma).
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