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19 protocols using bio plex workstation

1

Quantifying Inflammatory Mediators in Pleural Lavage

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Samples of the pleural lavage were centrifuged at 500 g for 8 min at 4 °C to obtain the supernatants. The concentrations of IL-1β, IL-6, TNF-α, CCL2/MCP-1 and KC/CXCL-1 in these supernatants were determined using a multiplex fluorescent microbead immunoassay (Bio-Rad Laboratories, Hercules, CA, USA). Cytokine levels were quantified using a Luminex technology (Bio-Plex Workstation; Bio-Rad Laboratories, Hercules, CA, USA). Data analysis was performed using Bio-Plex software (Bio-Rad Laboratories, Hercules, CA, USA). The concentrations of LTB4 in the pleural lavages, as well as cytokines in the supernatants of macrophage cultures, were analyzed using ELISA kits in accordance with the manufacturer’s instructions (Cayman Chemical, Ann Arbor, MI, USA: LTB4 and R&D Systems, Minneapolis, MN, USA: Cytokines). All analyses were performed 4 h after stimulation with LPS.
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2

Multiplex Cytokine Profiling in Implant-Associated Inflammation

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To quantitate inflammatory mediator production in tissues associated with infected and aseptic implants in the mouse model, a custom-designed mouse microbead array was used according to the manufacturer's instructions (MILLIPLEX; Millipore Corporation, Billerica, MA) and included the following inflammatory mediators: G-CSF, GM-CSF, IFN-γ, IL-1α, IL-1β, IL-2, IL-4, IL-5, IL-6, IL-7, IL-9, IL-10, IL-12p70, IL-13, IL-15, IL-17, CCL2, CCL3, CCL5, CXCL1, CXCL2, CXCL9, CXCL10, TNF-α, and VEGF. For analysis of human PJI tissue specimens, a human 38-plex panel was utilized, which included: EGF, FGF-2, Flt-3L, G-CSF, GM-CSF, IFN-α2, IFN-γ, IL-1α, IL-1β, IL-1ra, IL-2, IL-3, IL-4, IL-5, IL-6, IL-7, IL-8, IL-9, IL-10, IL-12p40, IL-12p70, IL-13, IL-15, IL-17, CX3CL1, CCL2, CCL3, CCL4, CCL7, CCL11, CCL22, CXCL1, CXCL10, sCD40L, TGF-α, TGF-β, TNF-α, and VEGF. Results were analyzed using a Bio-Plex Workstation (Bio-Rad, Hercules, CA) and normalized based on the amount of total protein to account for differences in tissue sampling size. The level of sensitivity for most analytes in the array was 3.2 pg/ml.
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3

Cytokine profiling in 16HBE cells

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Supernatant samples from 16HBE cells were processed for a multiplex biometric immunoassay, using fluorescently dyed microspheres conjugated to monoclonal antibodies specific for a target protein, was used to measure 11 cytokines (TNF-α, IL-1β, IL-6, IL-8, IL-33, TSLP, MCP-1, GM-CSF, and IFN-γ), the viral sensors RIG-I, MDA5, and IRF3, and the transcription factor NF-Κb, according to the manufacturer’s instructions (Bio-Plex Human Cytokine Assay; Bio-Rad Inc., Hercules, CA, USA). The protein concentration of each cytokine, chemokine, receptor, and transcription factor was determined using a multiplex array reader from Luminex™ Instrumentation System (Bio-Plex Workstation from Bio-Rad Laboratories, Hercules, CA, USA). The analyte concentrations were calculated using software provided by the manufacturer (Bio-Plex Manager Software).
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4

Multiplex Cytokine Profile Analysis

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Secretion levels of IL-6, IL-8, TNF-α, and VEGF were detected using a multiplex biometric immunoassay (Cat. No. HCYTOMAG-60K; Millipore). Luminex Technology (Bio-Plex Workstation; Bio-Rad Laboratories, Hercules, CA, USA) was used to calculate the mean fluorescence intensity. Milliplex® Analyst 5.1 (Bio-Rad Laboratories) was applied for data analysis.
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5

Cytokine profile in S. aureus biofilm infection

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To evaluate the effects of Ly6G-versus Gr-1-mediated cell depletion on
the inflammatory milieu during S. aureus orthopedic biofilm
infection, a custom-designed mouse microbead array was used (MILLIPLEX;
Millipore Corporation, Billerica, MA), which detects the following mediators:
G-CSF, GM-CSF, IFN-γ, IL-1α, IL-1β, IL-2, IL-4, IL-5,
IL-6, IL-7, IL-9, IL-10, IL-12p70, IL-13, IL-15, IL-17, CCL2, CCL3, CCL5, CXCL1,
CXCL2, CXCL9, CXCL10, TNF-α and VEGF. A Bio-Plex workstation (Bio-Rad,
Hercules, CA) was used to analyze results and values were normalized to the
total amount of protein recovered from each sample.
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6

Cytokine Profiling of HDM and Poly(I:C) Stimulated H292 Cells

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Cells-free supernatants of 8 and 24 hours HDM and poly(I:C) stimulated H292 cells together with non-stimulated HBSS controls were used to determine protein levels of the following mediators: IL-1RA, IL-1β, IL-2R, IL-2, IL-4, IL-5, IL-6, IL-8, IL-10, IL-12, IL-13, IL-15, IL-17, eotaxin, TNF-α, IFN-α, IFN-γ, MCP-1, GM-CSF, G-SCF, VEGF, FGF-β, EGF, HGF, IP-10, MIG, RANTES, MIP1-α, MIP1-β, IP-10. Cytokine levels were measured with a use of a Human Cytokine Thirty-Plex Antibody Bead Kit (Invitrogen, NL) in combination with a Bio-Plex workstation (Bio-Rad, NL). All standards were diluted in HBSS medium as described by the manufacturer. Luminex software was employed for the protein concentration calculations and all concentrations are expressed in pg/mL. Fold changes were calculated by comparing the production of a cytokine in stimulated sample to non-stimulated HBSS control sample. If measured protein concentration was below the detection level, the fold change was calculated on the basis of the detection limit for the respective mediator. Statistical significance (p<0.05) was determined by ANOVA and Student’s t-test using GraphPad Prism for Windows.
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7

Multiplex Biometric Immunoassay for Inflammatory Mediators

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A multiplex biometric immunoassay containing fluorescent-dyed microspheres conjugated with a monoclonal-specific antibody for a target protein was used for measurement of inflammatory mediators according to the manufacturer´s instructions (Bio-Plex Pro Human Cytokine 17-plex Assay; Bio-Rad Inc., Hercules, CA, USA). The mediators measured were: IL-1β, IL-2, IL-4, IL-5, IL-6, IL-7, IL-8, IL-10, IL-12 (p70), IL-13, IL-17, G-CSF, GM-CSF, MCP-, MIP-1β, IFN-γ, and TNF mediator levels were determined by a multiplex assay reader from the Luminex Instrumentation System (Bio-Plex Workstation from Bio-Rad Laboratories, Inc.). Analyte concentration was estimated according to the standard curve using the Bio-Plex Manager software provided by the manufacturer. Values of unstimulated cultures were discounted from all stimuli.
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8

BALF Cytokine Profiling in Murine Infection

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Bronchoalveolar lavage fluid (BALF) samples were isolated from mouse lungs at 1, 3, 5, and 7 dpi. BALF from uninfected mice was used as an intact control. Collected samples were centrifuged at 12,000 rpm for 5 min at 4 °C, aliquoted, and stored at −70 °C until the analysis. BALF samples (20 μL) were incubated with antibody-coupled beads specific for Interleukin 1 beta (IL-1β), IL-2, IL-10, tumor necrosis factor-alpha (TNF-α), interferon-gamma (IFN-γ), and granulocyte-macrophage colony-stimulating factor (GM-CSF). The complexes were washed, incubated with biotinylated detection antibody and streptavidin–phycoerythrin. Cytokine levels in BALF samples were then determined using a multiplex array reader from Luminex™ Instrumentation System (Bio-Plex Workstation, Bio-Rad Laboratories, Hercules, CA, USA).
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9

Quantifying Brain Abscess Inflammation

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Mice were euthanized at the indicated intervals after infection and perfused transcardially with ice-cold PBS. Brain abscesses were dissected within 1–2 mm of the lesion margins and immediately disrupted in 500 μl of homogenization buffer [1X PBS supplemented with a protease inhibitor cocktail tablet (Roche, Mannheim, Germany) and RNase inhibitor (Promega, Madison, WI)]. Serial 10-fold dilutions of brain abscess homogenates were plated on trypticase soy-agar (TSA) plates supplemented with 5% sheep blood (Hemostat Laboratories, Dixon CA) to determine bacterial titers (expressed as log10 CFU/g wet tissue weight). To compare proinflammatory mediator expression profiles between KO versus WT mice, a multi-analyte microbead array was utilized according to the manufacturer’s instructions (MILLIPLEX; Millipore, Billerica, MA) that detects IL-1α, IL-1β, TNF-α, IFN-γ, IL-6, IL-9, IL-10, IL-12p40, IL-12p70, IL-15, IL-17, CXCL1, CXCL2, CXCL9, CXCL10, CCL2, CCL3, CCL4 and CCL5. Results were analyzed using a Bio-Plex workstation (Bio-Rad, Hercules, CA) and adjusted based on the amount of total protein extracted from brain abscess homogenates for normalization using a colorimetric Bio-Rad DC Protein Assay kit (Bio-Rad). IL-1β was also measured by sandwich ELISA (BD OptIEA, San Diego, CA).
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10

Multiplex Cytokine Quantification in Serum

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A multiplex assay was performed to quantify the serum levels of the following cytokines: IFN-γ, TNF, IL-1β, IL-2, IL-4, IL-5, IL-6, IL-7, IL-8, IL-10, IL-12, IL-13, IL-17, MCP-1, and MIP-1β. Cytokine contents were calculated by Luminex technology (Bio-Plex Workstation; Bio-Rad Laboratories, USA). Data analysis was performed using the software provided by the manufacturer (Bio-Rad Laboratories, USA). Recombinant cytokines were used to establish standard curves and the sensitivity of the assay. Results were expressed as Median Fluorescence Intensity (MFI) (37 (link)). The MFI of the last point of each standard curve was used to determine the detection limit of each cytokine.
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