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Xcalibur data system version 1

Manufactured by Thermo Fisher Scientific
Sourced in Italy

The Xcalibur data system version 1.4 is a software application designed to process and analyze data from various analytical instruments, including mass spectrometers. The core function of the Xcalibur data system is to provide a comprehensive platform for data acquisition, processing, and management.

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2 protocols using xcalibur data system version 1

1

High-Resolution Tandem Mass Spectrometry

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MS/MS analyses were performed on an LTQ-OrbitrapXL mass spectrometer (Thermo Fisher Scientific, Monza, Italy) equipped with a nanospray ion source. The spray capillary voltage was set at 1.7 kV, and the ion transfer capillary temperature was held at 220 °C. Full MS spectra were recorded over a 400–1600 m/z range in positive ion mode, with a resolving power of 60,000 (full width at half-maximum) and a scan rate of 2 spectra/s. This step was followed by five low-resolution MS/MS events that were sequentially generated in a data-dependent manner on the top five ions selected from the full MS spectrum (at 35% of collision energy), using dynamic exclusion of 0.5 min for MS/MS analysis. Mass spectrometer scan functions and high-performance liquid chromatography solvent gradients were controlled by the Xcalibur data system version 1.4 (Thermo Fisher Scientific, Monza, Italy).
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2

Mass Spectrometry Analysis of Biomolecules

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MS/MS analyses were performed on an LTQ-OrbitrapXL mass spectrometer (Thermo Fisher Scientific, Monza, Italy) equipped with a nanospray ion source. The spray capillary voltage was set at 1.7 kV and the ion transfer capillary temperature was held at 220 °C. Full MS spectra were recorded over a 400–1600 m/z range in positive ion mode, with a resolving power of 60000 (full width at half-maximum) and a scan rate of 2 spectra/s. This step was followed by five low-resolution MS/MS events that were sequentially generated in a data-dependent manner on the top five ions selected from the full MS spectrum (at 35% collision energy), using dynamic exclusion of 0.5 min for MS/MS analysis. Mass spectrometer scan functions and high-performance liquid chromatography solvent gradients were controlled by the Xcalibur data system version 1.4 (Thermo Fisher Scientific, Monza, Italy).
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