The largest database of trusted experimental protocols

113 protocols using sylgard

1

Isolated Hindbrain and Spinal Cord Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Germline-GCaMP6F pups (P0-P6) were anesthetized with isoflurane; the forebrain was exposed and removed, enabling isolation of the hindbrain and spinal cord in chilled artificial cerebrospinal fluid (aCSF) made up of (in mM) 128.0 NaCl, 3.0 KCl, 1.2 CaCl2, 1.0 MgSO4, 21.0 NaHCO3, 0.5 NaH2PO4, and 30.0 glucose, equilibrated with 95% O2–5% CO2. The hindbrain was transected at the level of the sensory portion of the trigeminal nerve, just rostral to the facial nucleus (VIIn). The preparation was then mounted with the dorsal side down on an attachment permitting sectioning at compound angles [57 (link)], using the basilar artery to reproducibly align the preparation along the midline of the chuck. A sagittal section was cut at the lateral edge of the VIIn, visible at the surface of the preparation, at 17.7° ventrodorsal tilt and 3.7° rostrocaudal tilt relative to the midline, to expose the VRC along its major axis. The preparation was mounted on the face of a Sylgard (Dow Corning, Midland MI) block cut at the ventrodorsal tilt angle, so that the sagittal face of the preparation, aligned with the top edge of the Sylgard block, was perpendicular to the light path. A razor-blade fragment embedded in the Sylgard block enabled the preparation to be stabilized in the recording chamber by the placement of a 10-mm neodymium magnet on the undersurface of the recording chamber.
+ Open protocol
+ Expand
2

Tadpole Touch Response Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
The response of the tadpoles to a touch stimulus (hair, 10 μm tip) applied to the head was analysed using high‐speed video recording (Exilim EX‐F1; Casio, Tokyo, Japan) with 300 frames s–1. For this, the animals were placed in a small Petri dish (diameter 8 cm) base‐filled on one side with a layer of Sylgard (Dow Corning, Midland, MI, USA) in an upright (dorsoventral) position within a groove cut into the edge of the Sylgard so that the head and cement gland were unrestrained. An array of LED lights provided even illumination from below. The videos were cut and analysed using ImageReady video editing software (Adobe Systems Inc., San Jose, CA, USA) and ImageJ image processing software (NIH, Bethesda, MD, USA).
+ Open protocol
+ Expand
3

Dissection and Pharmacological Manipulation of Retzius Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
All experiments were done on electrically coupled Retzius (R) neurons from midbody ganglia (ganglia 7 to 16). Before dissection, leeches were anesthetized on ice cooled water for at least 10 min. Segmental ganglia were dissected and removed from the animal as previously described69 (link) and pinned, ventral side up to a superfusion chamber coated with Sylgard (Dow Corning). Dissection was carried out in leech Ringer solution composed of (in mM): NaCl, 115; KCl, 4; CaCl2, 1.8; MgCl2, 1.5; glucose, 10; tris-(hydroxymethyl)-aminomethane (Tris) maleate, 4.6; Tris base, 5.4 (all Sigma), buffered to pH 7.4. For pharmacological experiments, the ventral glial sheath covering the ganglia was opened with a fine microscissor to ensure the direct exposure of the R cells to the drugs in the external solution.
+ Open protocol
+ Expand
4

Spatial Calcium Imaging of Intestinal Interstitial Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Colonic muscles were pinned with the CM layer facing upward to the bottom of a 60 mm dish coated with Sylgard (Dow Corning, Midland, MI) and perfused with KRB solution (37°C) for 1 hr before experiments were begun. Ca2+ imaging was performed on ICC-IM in situ with an Eclipse E600FN microscope (Nikon Inc., Melville, NY, USA) equipped with a 40-60x 1.0 CFI Fluor lens (Nikon instruments INC, NY, USA). GCaMP6f was excited at 488 nm (T.I.L.L. Polychrome IV, Grafelfing, Germany). Using this acquisition configuration, the pixel size was 0.225 μm. Image sequences of Ca2+ transients in ICC-IM were collected at 33 fps with TILLvisION software (T.I.L.L. Photonics GmbH, Grafelfing, Germany). Movement artefacts were stabilized digitally with custom made Volumetry software (10 , 51 (link)–53 (link)) prior to analysis of Ca2+ transients. For experiments involving pharmacological treatments, control image sequences were collected for 20-30 sec, and then KRB solution containing the drug concentration to be tested was perfused into the bath for 12-15 mins before another 20-30 sec period of imaging was performed.
+ Open protocol
+ Expand
5

Bovine Ampullae Inflammation Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Qualitative and quantitative analyses in bovine ampullae showing mild, moderate or severe inflammation (n = 45) as well as in healthy controls (n = 10) were performed by digital live cell imaging. 1 cm part of the ampulla of each sample was cut and opened longitudinally. Specimens were pinned onto a Delta T dishes (Bioptechs Inc., PA, USA) coated with Sylgard® (Dow Corning, MI, USA). All samples were maintained at 37.5 °C using a stage heater (Delta T Controller, Bioptech Inc., USA) and an objective lens heater (Delta T Controller, Bioptech Inc., USA) attached to the microscope. Reference temperature was monitored prior to all recordings. For sperm-oviduct interaction and average survival time, 600,000 sperm (30 μl) were coincubated with the ampulla for 10 mins at 37 °C and submerged with sperm Talp before analysis. Imaging was performed with a fixed stage microscope, upright Olympus microscope (BX51WI) with water immersion dipping objectives equipped with the bright-field long-distance immersion objectives UMPLFLN 10xW, UMPLFLN 20xW and UMPLFLN 40xW (Olympus, Hamburg, Germany). Images and videos were documented with a SUMIX Mx7 camera (Summix, CA, USA).
+ Open protocol
+ Expand
6

Microfluidic Device Fabrication via Replica Molding

Check if the same lab product or an alternative is used in the 5 most similar protocols
The microfluidic layouts (Fig. 1a) were designed by means of a CAD software (AutoCAD, Autodesk Inc.) and the corresponding master molds were realized through photolithography techniques43 . A thin microfluidic layer (thickness 1 mm) was obtained by replica molding of polydimethylsiloxane (PDMS; Sylgard® Dow Corning, Michigan, USA). Briefly, liquid PDMS was cast on the mold in ratio 10:1 w/w (pre-polymer to curing agent), degassed and cured at 80 °C for 3 h. The obtained PDMS microstructured layer was permanently bonded facing up to a flat PDMS slab (thickness 5 mm), upon 1 min of air plasma treatment (Harrick Plasma, NY, USA), thus closing the channels. Input and output ports were obtained through a 0.5 mm biopsy puncher (Harris Uni-CoreTM). The chip was finally permanently bonded to a glass coverslide (diameter 50 mm, thickness 150 μm; VWR International Inc., PA, USA) upon an additional 1 min exposure to air plasma (Fig. 1b). External connections were realized through tygon tubings (ID = 0,02”; Qosina, NY, USA) and stainless steel couplers (23 gauge; Instech Laboratories Inc., PA, USA).
+ Open protocol
+ Expand
7

Gluteus Maximus Muscle Dissection Technique

Check if the same lab product or an alternative is used in the 5 most similar protocols
Once anesthetized, mice were placed under a stereomicroscope. The left gluteus maximus area of the mouse was shaved and cleaned to remove the fur. The gluteus maximus muscle was chosen over the cremaster muscle, as used in other experiments such as Payne et al. (2003) [18 (link)], because the cremaster is only found in males and we performed these experiments in both males and females. The skin covering the muscle area was cut away and the proximal edge of the gluteus maximus muscle cut parallel to the spine and reflected away from the mouse ensuring preservation of the vascular supply to the tissue. The muscle was then positioned to lay flat and the proximal edge pinned down on a Sylgard (Dow Corning, Midland, MI, USA) board. Physiological saline solution (PSS) made of bicarbonate (18.0 mM) and basic salt solution (131.9mM NaCl, 4.7 mM KCl, 2.0 mM CaCl2•2H2O, 1.17 mM MgSO4•7H2O) at pH 7.4 was superfused over the muscle tissue to mimic physiological conditions. The solution was kept at a temperature of 37 °C using a heated perfusion reservoir (Radnoti, USA).
+ Open protocol
+ Expand
8

Cephalopod Pedal Nerve Stimulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Animals were anesthetized by injecting 333 mM MgCl2 (~50% of body weight). Pedal ganglia were removed maintaining the innervation of the foot muscles. This innervation extends from the posterior edge of the mantle cavity to the anterior tentacles and parts of the body wall. Preparations were pinned to a 2-chamber dish lined with Sylgard (Dow Corning) (Fig. 3A). To facilitate the pinning, we only preserved the innervation of the experimental (mostly right) side of the preparation. The pedal nerves on the other side were severed. The foot muscle was situated in the larger of the 2 chambers, whereas the pedal ganglion was pinned to the smaller chamber, which had a higher Sylgard floor.
We cannulated the pedal artery, and foot muscles were continuously perfused with fresh ASW at ~0.5 ml/min throughout the experiments. Perfusion began immediately after the preparation was isolated. Experiments were initiated after 2 to 3 h (i.e., washout of the anesthetic). To monitor muscle contractions elicited by either P9 stimulation or motoneuronal stimulation, the edge of foot was pinned with multiple pins, and the middle of the foot was attached to a force transducer (Isotonic Transducer “60–3000,” Harvard Apparatus) (see Fig. 3A). Preparations were maintained at 14 to 16 °C.
+ Open protocol
+ Expand
9

Synthesis and Characterization of Silver Nanoparticles

Check if the same lab product or an alternative is used in the 5 most similar protocols
A silver (I) nitrate particle sample was purchased from Daejung Chemical & Metals (Shiheung-City, Korea). Sodium sulfate powder was purchased from Junsei Chemical (Tokyo, Japan). Phosphate buffered saline (PBS) (pH 7.4, 10 mM) solution used as the electrolyte in this study and triton X-100 solution were obtained from Sigma-Aldrich (St. Louis, MO, USA). Single layer graphene oxide (500 mg/L) dispersed in water was purchased from Graphene Supermarket (Calverton, NY, USA). Sylgard (Dow Corning, Midland, MI, USA) 184 silicone elastomer curing agent and Sylgard 184 silicone elastomer base were acquired from Dow Corning (Midland, MI, USA) for polydimethylsiloxane (PDMS) preparation. All aqueous solutions were prepared using deionized water (DIW) from a Millipore Milli-Q water purifier operating at a resistance of 18 MΩ/cm.
+ Open protocol
+ Expand
10

Acute Rat Cochlear Recordings

Check if the same lab product or an alternative is used in the 5 most similar protocols
Recordings were performed on acutely excised cochlear preparations from Sprague Dawley rats (Charles River Laboratories) at room temperature (22–25°C). Recording pipettes were fabricated from 1 mm borosilicate glass (WPI). Pipettes were pulled with a multistep horizontal puller (Sutter), coated with Sylgard (Dow Corning) and fire polished. Drug application was mediated by whole-bath perfusion or a gravity-driven flow pipette (100-µm-diameter opening) placed near the row of IHCs and connected with a VC-6 channel valve controller (Warner Instrument).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!