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ZAP70 is a protein tyrosine kinase that plays a central role in T-cell receptor (TCR) signaling. It is responsible for the initiation of downstream signaling events following TCR activation. ZAP70 contains two SH2 domains that bind to phosphorylated tyrosine residues on the TCR-associated ζ chain, leading to its activation and the subsequent phosphorylation of various substrates.

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20 protocols using zap70

1

Antibody-Based Signaling Pathway Analysis

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All antibodies, including the anti-phospho specific antibodies that recognize Erk, P38, JNK/SAPK, Zap-70 and Syk were purchased from Cell Signaling Technology, Inc. (Beverly, MA).
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2

T cell Signaling Proteins Analysis

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T cells were purified from spleens and lymph nodes using EasySep CD4+ purification kits (STEMCELL Technologies). Equal numbers of T cells from WT, LATm/m, and IL6−/−LATm/m mice were lysed, resolved on SDS-PAGE, and blotted with antibodies against the following proteins: Zap70, pLck, Lck, pERK, ERK2, pAkt (Ser473), Akt, pP38, P38, pNFκB, and NFκB (Cell Signaling).
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3

Antibody Panel for Signal Transduction

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Anti-LAT, anti-PLC-γ1, and anti-Erk antibodies were from Santa Cruz Biotechnology (Heidelberg, Germany). The anti-NTAL NAP-07 monoclonal antibody was from EXBIO (Prague, Czech Republic). Antibodies binding phospho-Erk, phospho-PLC-γ1-Tyr783, ZAP70, phospho-ZAP70-Tyr319, phospho-MEK-Ser221, and anti-MEK were from Cell Signaling Technology. Anti-β-actin, anti-CD3 (OKT3), and anti-CD4 monoclonal antibodies were provided by Biolegend (San Diego, CA, USA).
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4

Immunoblotting analysis of NK cell proteins

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NK cells were enriched from splenocytes using MACS and then sorted o high (>99% purity) on a FACS Aria II (BD Biosciences). Cell extracts were generated using laemmli sample buffer (Syk, FcR1γ and Zap 70) or RIPA buffer (CD3ζ), in the presence of protease inhibitors (complete Ultra, Roche). Equal amounts of total lysate were analyzed by 12% SDS-polyacrylamide gel electrophoresis. Proteins were transferred to Immobilon-P and incubated with blocking buffer (Tris buffered saline/Tween-20) containing 2% low-fat milk for 1 h before incubating with an antibody against Syk (Cell signaling), FcR1γ (Merckmillipore), Zap-70 (Cell signaling) and CD3ζ (Sigma), Akt (Cell signaling) or β-actin (Santa Cruz). Bands were visualized with ECL Prime Immuno Blotting Detection Reagent (GE Healthcare) using ImageQuant LAS 4000mini (GE Healthcare, Life Science).
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5

Multiparametric Analysis of Signaling Pathways

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Cells were fixed with warm Cytofix Buffer (BD Biosciences) at 37°C for 10 min, permeabilized with ice-cold Perm Buffer III (BD Biosciences) at 4°C for 30 min and then incubated for 30 min at room temperature with antibodies to: LCK, ZAP-70, p-AMPK, Sestrin2 (all from Cell Signalling), PercPCy5-conjugated p-Erk, Alexa-Fluor 647-conjugated p-Jnk, PE-conjugated p-p38 and PE-conjugated γ-H2A-x (all from BD Biosciences). When primary unconjugated antibodies were used, they were subsequently probed with a secondary mouse (or goat) Alexa Fluor 647-conjugated anti-rabbit IgG (BD Biosciences) for 30’ at room temperature, in the dark. After washing in Stain Buffer (BD Pharmingen), samples were analysed immediately using an LSR Fortessa (BD Biosciences). Data were analyzed using FlowJo software (Treestar). For transduced cells, events were gated on the GFP+ compartment as indicated.
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6

T Cell Signaling Pathway Analysis

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Antibodies used for T cell stimulation included DimerX I recombinant HLA-A2 Ig (BD Biosciences), CD3 (clone OKT3, Biolegend), and CD28 (clone CD28.2, Biolegend). Western blot antibodies included PTPN22 (clone D6D1H, Cell Signaling Technology), Lck (Cell Signaling Technology), Zap-70 (Cell Signaling Technology), α-tubulin (clone TU-02, Santa Cruz), anti-rabbit Ig (Life Technologies) and anti-mouse Ig (LI-COR). For IP-FCM, the Akt capture antibody used was clone SKB1 (Merck Millipore), total Akt was detected using clone 53G (Cell Signaling Technology), and phospho Akt S473 was detected using clone D9E (Cell Signaling). Flow cytometry antibodies included CD69 (clone FN50, BD Biosciences), Il-2 (clone MQ1-17H12, Biolegend), pSrc family Y416 (Cell Signaling Technology), Lck pY505 (Cell Signaling Technology), Zap-70 pY493 (Cell Signaling Technology), Erk 1/2 pY204 (clone 197G2, Cell Signaling Technology), NFAT (clone D43B1, Cell Signaling Technology), cFos (clone 2G2, Novus Biologicals), an anti-rabbit secondary (Invitrogen), and an anti-mouse secondary (Life Technologies).
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7

Multiparametric Analysis of Signaling Pathways

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Cells were fixed with warm Cytofix Buffer (BD Biosciences) at 37°C for 10 min, permeabilized with ice-cold Perm Buffer III (BD Biosciences) at 4°C for 30 min and then incubated for 30 min at room temperature with antibodies to: LCK, ZAP-70, p-AMPK, Sestrin2 (all from Cell Signalling), PercPCy5-conjugated p-Erk, Alexa-Fluor 647-conjugated p-Jnk, PE-conjugated p-p38 and PE-conjugated γ-H2A-x (all from BD Biosciences). When primary unconjugated antibodies were used, they were subsequently probed with a secondary mouse (or goat) Alexa Fluor 647-conjugated anti-rabbit IgG (BD Biosciences) for 30’ at room temperature, in the dark. After washing in Stain Buffer (BD Pharmingen), samples were analysed immediately using an LSR Fortessa (BD Biosciences). Data were analyzed using FlowJo software (Treestar). For transduced cells, events were gated on the GFP+ compartment as indicated.
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8

Multiparameter Immune Cell Analysis

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ERK1/2, phospho-ERK1/2 (Thr202/Tyr204), Akt (pan), phospho-Akt (S473), CD79b, CD79a, phospho-CD79a (Tyr182), SHP1, phospho-SHP1 (Tyr564), SHIP1, phospho-SHIP1 (Tyr1020), BTK, phospho-BTK(Tyr223), NF-kB p65, phospho–NF-kB p65 (ser536), IgM, Lyn, phospho-Lyn (Y507), LCK, CD86, and ZAP70 antibodies were from Cell Signaling Technology (Beverly, MA). Anti-SRC family (phospho-Y418)–phospho-Lyn (Y396), CD62L, and IgG antibodies were from Abcam (Cambridge, UK). Purified anti-human actin antibody was obtained from MP Biomedicals (Illkirch, France). Goat anti Rabbit IgG (H+L)–HRP conjugate and Goat anti Mouse IgG (H+L)–HRP conjugate, Goat F(ab′)2 anti-human IgM and Goat F(ab′)2 anti-human IgG were from Jackson Immunoresearch Laboratories (West Grove, PA). All antibodies utilized in the study were used in concentrations according to the manufacturer’s instructions. Ficoll-Paque PLUS from GE healthcare (Uppsala, Sweden), dimethyl sulfoxide (DMSO) from Merck (Darmstadt, Germany), RPMI, fetal calf serum (FCS), Dulbecco’s phosphate-buffered saline (PBS), L-glutamine, and penicillin-streptomycin from Biological Industries (Beit-Haemek, Israel) were utilized for cell cultures.
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9

Characterization of T Cell Signaling Pathways

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Antibodies against HLA-A2 (BB7.2), HLA-ABC (W6/32), CD8a (RPA-T8), TNF (MAb11), and IFN-γ (4 S.B3) were purchased from eBioscience. Anti-CD3 (SK7), CD107a (H4A3), CD247-Alexa Fluor 488 (pY142) (K25-407.69), pCD3ζ (pY142) (K25-407.69), Erk1 (Cat# 610031), and PLC-γ1 (Cat# 610027) were from Becton Dickinson. Anti-pLAT (Tyr191) (Cat# 3584S), P-p44/42 MAPK (T202/Y204) (Cat# 4370L), pSrc family (pY416) (Cat# 6943T), non-pSrc family (pY416) (Cat# 2102S), pSHP-1 (Cat# 8849S), pZap70 (pY319) (Cat# 2717S), Zap70 (Cat# 2709), pPLC-γ1 (pY783) (Cat# 2821S), α-tubulin (Cat# 3873S), GAPDH (Cat# 2118S) antibodies were from Cell Signaling Technologies. Anti-LAT (11B.12) and β-2-microglobulin (2M2) antibodies were from Biolegend. Mouse anti-human HLA-A2-E183-91 and mouse antihuman HLA-A2-C18-27 primary antibodies were produced as described18 (link). F(ab’)2-goat anti-rabbit IgG (H + L) cross-adsorbed secondary antibody, Alexa Fluor 488 (Cat# A-11070), and goat anti-mouse IgG (H + L) cross-adsorbed secondary antibody, Alexa Fluor 647 (Cat# A-21237) were purchased from Thermo Fisher Scientific.
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10

T Cell Activation Signaling Analysis

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Purified T cells were serum starved overnight in complete medium supplemented with 0.5% FCS, and subsequently activated on anti-CD3 antibodies (1 μg/ml) coated plates in the presence of anti-CD28 antibodies (1 μg/ml) with or without SRA-ECD protein (10 μg/ml). Activated cells were lysed using RIPA buffer (50 mM Tris, 150 mM NaCl, and 1% Nonidet P-40, pH 7.4) and protein lysates were subjected to western blot analysis with antibodies against phospho-ZAP70, ZAP-70 (Cell Signaling Technology, Danvers, MA, USA) or GAPDH (Thermo scientific Inc., Waltham, MA, USA).
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