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Axiovert observer z1

Manufactured by Zeiss
Sourced in Germany

The Axiovert Observer Z1 is a high-performance inverted microscope designed for a variety of laboratory applications. It features a stable, ergonomic design and offers a range of optical configurations to support diverse research needs.

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11 protocols using axiovert observer z1

1

Confocal Microscopy Imaging Protocol

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Tissue sections were examined and images captured using a Zeiss 510 laser scanning confocal microscope with UV (405 nm), argon (488 nm), helium/neon (546 nm) and helium/neon (633 nm) lasers. All images were acquired as 10–30 μm Z-stacks (in 1–2 μm intervals) and analysed as projections using the LSM 510 Image Browser software (Zeiss, Oberkochen, Germany). Epifluorescent and light microscopy images were acquired with a Zeiss Axiovert Observer Z1 epifluorescent/light microscope equipped with an AxioCam cooled-color camera (Zeiss). Images were exported to Adobe Photoshop CS5 (Adobe Systems Inc., San Jose, CA, USA) and further processed for contrast when necessary.
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2

Microscopic Colocalization Analysis of Phagocytosis

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Imaging was performed at 63x with an AxioCAM MRm camera-equipped Zeiss Axiovert Observer Z1 inverted fluorescence microscope. Ingestion of host mCherry was scored manually as mCherry positive or mCherry negative. Colocalization of ingested mCherry and endolysosomal markers was scored manually with each individual puncta of ingested mCherry or endolysosomal marker signal being scored using a binary measure of colocalized or not. This gives a readout of percent puncta colocalized with a given endolysosomal marker within each experiment. Ingested mCherry or endolysosomal marker puncta were scored as colocalized if they showed any overlap, and there was no differentiation between complete or partial colocalization. An independent, blinded observer validated the colocalization findings for ingested mCherry by reanalyzing 15 percent of the colocalization data. Their findings confirmed the reported results.
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3

Evaluating Toxoplasma Vacuole Size

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Syringe released tachyzoites were allowed to invade HFF cells for 2 h at 37°C followed washing with PBS. Newly invaded parasites were again syringe released and affixed to slides coated with Cell-Tak™ (Corning), fixed with 4% paraformaldehyde, and stained with mouse α-CPB to identify the VAC. Images were acquired by focusing on the VAC signal in the maximum number of parasites within a field of view and captured on a Zeiss Axiovert Observer Z1 inverted fluorescence microscope equipped with a 100X and an AxioCAM MRm camera and processed using Zeiss Axiovision 4.3 software. For Pru, PΔcpl, PΔcpl:c/CPL, and PΔcpl:c/CPL strains VAC size was measured with Zeiss Axiovision 4.3 software by defining the area of α-CPB immunofluorescence. VAC measurements were only performed on VACs that were within focus. Equal parameters for the capture and enumeration of images were consistently applied to all samples. We cannot rule out that fixation differentially affected VAC size for the different strains assessed in the study.
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4

Confocal Microscopy Imaging Protocol

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Tissue sections were examined and images captured using a Zeiss 510 laser scanning confocal microscope with UV (405 nm), argon (488 nm), helium/neon (546 nm), and helium/neon (633 nm) lasers. All images were acquired as 10–30 μm Z-stacks (in 1–2 μm intervals) and analyzed as projections using the LSM 510 Image Browser software (Zeiss, Oberkochen, Germany). Epifluorescent and light microscopy images were acquired with a Zeiss Axiovert Observer Z1 epifluorescent/light microscope equipped with an AxioCam cooled-color camera (Zeiss). Images were exported to Adobe Photoshop CS5 (Adobe Systems Inc., San Jose, CA, United States) and further processed for contrast when necessary.
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5

Quantifying Parasite Ingestion in Host Cells

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Parasite ingestion was determined using modifications of a previously reported assay (16 (link)). In brief, mCherry was expressed in inducible Chinese hamster ovary (iCHO) cells with the addition of 2 μg/ml of doxycycline (DOX). Parasites from infected iCHO cells were harvested, purified, treated with pronase and saponin, and imaged on Cell-Tak (Fisher Scientific)-coated slides using a Zeiss Axiovert Observer Z1 inverted fluorescence microscope. For each biological replicate, more than 97 parasites of each genotype or treatment were enumerated for host-derived mCherry accumulation within parasites. Samples were coded during the time of harvesting to blind the experimenter during imaging and quantification.
In this study, we refer to the in vitro conditions that promote tachyzoite conversion to bradyzoite cysts as “bradyzoite-inducing conditions.” This includes the use of alkaline (conversion) media and growth without CO2. For all experiments, 2 μg/ml DOX was used. Detailed changes for each ingestion assay are described below.
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6

Fluorescence Microscopy Imaging Protocol

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All phase-contrast and fluorescence imaging was performed on a Zeiss Axiovert Observer Z1 inverted fluorescence microscope. Exposure times within a given experiment were kept constant for all samples.
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7

Quantification of Baculovirus Infection Dynamics

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Live microscopy was performed as previously described [16 (link)] using a Zeiss Axiovert Observer Z1. Sf9 cells infected with AcMNPV1-ANCHOR3 were observed using a ×63 objective. Image analysis was performed using Fiji software. Visualization of the S. exigua larva infected by recombinant AcMNPV was carried out using a ×10 objective.
Fluorescence quantification was performed using 96-well, black flat-bottom plates filled with 100 µL of supernatant of infected cell culture at various times post-infection, using as control supernatant of wildtype (Wt) AcMNPV infected cells. In parallel, each sample titer was determined by plaque assay as indicated previously. The excitation wavelength used was 485 nm and the emission wavelength was 530 nm (bandwidth 20 nm for both). The intensity of fluorescence was measured in triplicate on a fluorescence reader Tecan Spark™ 10M microplate reader using SparkControl V1.2.20 software.
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8

Evaluating Toxoplasma Vacuole Size

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Syringe released tachyzoites were allowed to invade HFF cells for 2 h at 37°C followed washing with PBS. Newly invaded parasites were again syringe released and affixed to slides coated with Cell-Tak™ (Corning), fixed with 4% paraformaldehyde, and stained with mouse α-CPB to identify the VAC. Images were acquired by focusing on the VAC signal in the maximum number of parasites within a field of view and captured on a Zeiss Axiovert Observer Z1 inverted fluorescence microscope equipped with a 100X and an AxioCAM MRm camera and processed using Zeiss Axiovision 4.3 software. For Pru, PΔcpl, PΔcpl:c/CPL, and PΔcpl:c/CPL strains VAC size was measured with Zeiss Axiovision 4.3 software by defining the area of α-CPB immunofluorescence. VAC measurements were only performed on VACs that were within focus. Equal parameters for the capture and enumeration of images were consistently applied to all samples. We cannot rule out that fixation differentially affected VAC size for the different strains assessed in the study.
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9

Encapsulated Cell Viability Assay

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Encapsulated cell viability was assessed on days 1, 7 and 21 by calcein acetoxymethyl ester/ethidium homodimer fluorescent stain as described previously.1 (link) Briefly, hydrogels were submerged in media, 2 mM calcein acetoxymethyl ester, and 4 mM ethidium homodimer (LIVE/DEAD® Viability/Cytotoxicity Kit for mammalian cells; Life Technologies, Grand Island, NY). Viable cells within the hydrogel sheets were identified based on intracellular enzymatic conversion of non-fluorescent calcein-AM to green fluorescent calcein while ethidium homodimer-1 penetrated damaged membranes of dead cells and upon binding to nucleic acids fluoresced bright red. After 10 min in a tissue culture incubator, each hydrogel was imaged under an epifluorescent microscope (Zeiss Axiovert Observer Z1) and 10–15 optical slices at 28 µm intervals were taken in the z-plane at three diagonal positions (e.g., top left, center, and bottom right) in the x–y coordinates. Green fluorescent images for live cells and red fluorescent images for dead cells for each optical slice were separately processed on ImageJ software (Rasband, National Institutes of Health) to obtain cell counts.
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10

Immunofluorescence Staining of Cells

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Cells were fixed with 4% formaldehyde for 15 min, permeabilized with 0.05% saponin in PBS, and blocked with 10% goat serum. The cells were incubated with the appropriate dilution of primary antibody for 1 h at room temperature. After 1 h the antibody was removed and cells were washed three times with 0.05% saponin in PBS. The respective secondary antibodies (1:500 dilution) were applied and incubated for 45 min at room temperature. To visualize the nucleus, samples were either incubated with Hoechst (1 µg/ml) and then mounted in ProLong Diamond Antifade or mounted directly with Fluoroshield with DAPI. Antibodies used are listed in Table 1. Cells were imaged using a confocal microscope (Zeiss LSM 710) with a 63x objective lens or with a high throughput fluorescent microscope (Zeiss Axiovert Observer Z1).
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