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4 protocols using anti gfp from mouse igg1κ

1

Co-immunoprecipitation of Fluorescent Proteins in N. benthamiana

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FRET 2in1 destination vectors containing monomeric enhanced green fluorescent protein (mEGFP) and mCherry (pFRETgc-2in1) were used to transiently express recombinant proteins in N. benthamiana for co-IP analysis (28 (link), 35 (link)). Leaf material (150 to 600 mg) was harvested at 3 d postinfiltration and homogenized after freezing in liquid nitrogen. Lysis buffer (25 mM Tris pH 8.0, 150 mM NaCl, 1% Nonidet P-40, and 0.5% Na-deoxycholate) supplemented with protease inhibitor mixture and 2 mM DTT was added and incubated for 1 h at 4 °C with mild rotation. After centrifugation, the supernatant was mixed with 20 to 25 µL of RFP beads (RFP-trap; Chromotek) and then incubated for 1 h at 4 °C with mild rotation. Beads were collected by centrifugation, transferred onto spin columns, and rinsed twice with lysis buffer, followed by six washes with wash buffer (25 mM Tris pH 8.0 and 150 mM NaCl). (Co-) Immunoprecipitated proteins were eluted with 2× Laemmli buffer (+ 3.5% β-mercaptoethanol) and then heated at 65 °C for 15 min (membrane proteins) or at 95 °C for 5 min (soluble proteins). Proteins were separated by SDS-PAGE and detected by Western blot analysis (anti-RFP from mouse [Chromotek, 1:2,500], anti-GFP from mouse IgG1κ [Roche, 1:1,000], and anti-mouse IgG [Fc-specific] produced in goat [Sigma-Aldrich, 1:10,000]).
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2

GFP-Based Protein Immunoprecipitation

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Here 3 g of Arabidopsis seedlings were harvested after 10 d under continuous light. Cells were lysed by mortar grinding in liquid nitrogen and thawed in lysis buffer (50 mM Tris pH 7.5, 150 mM NaCl, 1% Triton X-100; 1.43 mL/g) supplemented with protease inhibitor mixture (cOmplete EDTA-free; Roche). Cell debris was removed by centrifugation and filtration through two layers of Miracloth. Then 2.5 mL of supernatant was mixed with 2 mL of lysis buffer and incubated with anti-GFP beads (25 µL, GFP-trap; Chromotek) for 2 h at 4 °C under mild rotation. Beads were collected by centrifugation, transferred onto spin columns, and washed six times with washing buffer (50 mM Tris pH 7.5, 150 mM NaCl, and 0.5% Triton X-100) supplemented with protease inhibitor mixture. (Co-) Immunoprecipitated proteins were eluted with 2× Laemmli buffer (+ 3% β-mercaptoethanol) at 80 °C for 5 min, separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), and detected by Western blot analysis (anti-HA peroxidase from rat IgG1 [Roche, 1:1,000], anti-GFP from mouse IgG1κ [Roche, 1:1,000], and anti-mouse IgG [Fc-specific] produced in goat [Sigma-Aldrich, 1:10,000]).
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3

Western Blot Protein Detection Protocol

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A quantity of 50–250 μg of protein sample were loaded on 8–15% polyacrylamide gels and transferred onto PVDF membrane (Merck Millipore) or Amersham Hybond‐ECL nitrocellulose membranes (GE Healthcare) using the Turboblot (BioRad) or a wet transfer system (BioRad). Blots were incubated overnight at 4°C with primary antibodies, probed with secondary antibodies and developed using ECL (Perkin Elmer). The following primary antibodies were used: anti‐BAX (1:1,000, Cell Signaling #2772), anti‐actin (1:10,000, Cell Signaling #4967), anti‐GAPDH (1:5,000, Santa Cruz sc‐47724), anti‐PARP (1:1,000, Cell Signaling #9542), anti‐BAK (1:1,000, Cell Signaling, #3814), anti‐BID (1:1,000, 2002S Cell Signaling), anti‐BOK (1:1,000, Abcam 186745), anti‐α‐tubulin (1:5,000 #2144 Cell Signaling), anti‐VDAC (1:1,000, D73D12, Cell Signaling), anti‐Smac/Diablo (1:1,000, D5S3R, Cell Signaling), anti‐cytochrome c (1:1,000, BD Pharmingen 556433) and anti‐GFP from mouse IgG1κ (1:1,000, clones 7.1 and 13.1, Roche).
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4

Affinity Purification of Recombinant Enzymes

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Preparation of the microsome after expression of the recombinant enzymes followed the procedure described in [17 (link)]. The total protein concentration of microsome solutions was adjusted to 5 μg/μL and treated with n–dodecyl β–maltoside (final concentration of 5 mM). To affinity purify the GFP fusion proteins, detergent-treated microsomal membranes (1 mg total protein) was incubated with 0.8 μg anti-GFP from mouse IgG1κ (Roche Diagnostics, Indianapolis, IN) at 4°C for 2-3 h with rotation followed by addition of 20 μL of protein G agarose slurry (contain 50% resin, pre-equilibrated in PBS) and additional incubation overnight at 4°C. For HA affinity purification, detergent-treated microsomal membranes (1 mg total protein) was incubated with 20 μL of monoclonal anti-HA agarose slurry (containing 50% resin) equilibrated in PBS with rotation for overnight at 4°C. In both treatments, the enzyme-immobilized resin was collected by centrifugation at 500 × g, 30 sec., at 4°C followed by three washing steps in PBS. The enzyme-immobilized resin was suspended in an equal volume of 50 mM HEPES, pH 7.0 with 10% glycerol [17 (link)] and used immediately for enzyme assay.
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