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5 protocols using cytarabine ara c

1

Characterization of AML Cell Lines

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The AML cell lines U937, MOLM-14, MV4-11, HL60, HEL, THP-1, NOMO-1, OCI-AML2, OCI-AML3 and NB4 were provided by collaborators or were purchased from ATCC or DSMZ (Braunschweig, Germany). All cell lines were cultured in RPMI-1640 medium containing 10% FBS (GIBCO, Life Technologies, Carlsbad, CA, USA), 2 μM l−1 glutamine, 100 U mL−1 penicillin, and 100 μg ml−1 streptomycin (GIBCO, Life Technologies, Carlsbad, CA, USA). The 293T cell line was purchased from ATCC and cultured in DMEM containing 10% FBS (GIBCO, Life Technologies, Carlsbad, CA, USA), 2 μM l−1 glutamine, 100 U mL−1 penicillin, and 100 μg mL−1 streptomycin (GIBCO, Life Technologies, Carlsbad, CA, USA). Daunorubicin (DNR) and cytarabine (ARA-C) were purchased from Selleck Chemicals LLC (Houston, TX, USA) and Sigma-Aldrich (St. Louis, MO, USA), respectively; SIRT6 chemical inhibitor [2,4-dioxo-N-(4-(pyridin-3-yloxyphenyl)-1,2,3,4-tetrahydroquinazoline-6-sulfonamide, henceforth named compound 1] was obtained from MolPort (Riga, Latvia).
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Chemical Compounds Characterization and Procurement

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Gemcitabine (purity > 98%), cycloheximide (purity > 93%) and MTT (purity > 98%) were purchased from Sigma-Aldrich (St. Louis, USA). LY294002 (purity > 98%) was purchased from Beyotime Institute of Biotechnology (Shanghai, China). Digoxin (purity > 97%), etoposide (purity > 99%), paclitaxel (purity > 99%), cisplatin (purity > 99%), 5-Fluorouracil (5-FU, purity > 99%), cytarabine (ara-C, purity > 99%), doxorubicin (purity > 99%) and MG132 (purity > 97%) were purchased from Selleck Chemicals (Houston, USA). Actinomycin D (purity > 95%) was purchased from KeyGen (Nanjing, China). Anti-NQO1, anti-HO-1 and anti-GCLC antibodies were obtained from Santa Cruz Biotechnology (Texas, USA). Anti-Keap1, anti-Nrf2, anti-p-Akt, anti-Akt, anti-p-P38 and anti-P38, anti-p-ERK1/2, anti-ERK1/2, anti-p-JNK and anti-JNK antibodies were purchased from Cell Signaling Technology (Danvers, USA). Anti-ABCC1 and anti-ABCC5 antibodies were purchased from ABclonal (Wuhan, China). Anti-β-actin and anti-ubiquitin antibodies were obtained from Bioworld (Minnesota, USA). Anti-lamin A antibody was obtained from Sigma-Aldrich (St. Louis, USA).
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Viability Assay for T-ALL Cells

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For viability assays T-ALL cells were cultured for 3 or 4 days with the indicated concentrations of drugs and analyzed with the Vybrant MTT Cell Proliferation Assay Kit (Thermo #V13154). Cytarabine (AraC; #S1648), and JQ1 (#S7110) were purchased from Selleck Chemicals, and Compound E from Enzo Life Sciences (#ALX-270–415-C250). Where applicable, cells were treated with 1 μM Dexamethasone (Selleck Chemicals #S1322) for 16–18 hours.
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Cytarabine, Methotrexate, and Vincristine Protocol

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Cytarabine (Ara-C) (Selleckchem, Cat # S1648), Methotrexate (MTX) (Selleckchem, Cat # S1210), Vincristine (VCR) (Selleckchem, Cat # S1241), MG132 (Selleckchem, cat # S2619), Caffeine (Sigma-Aldrich, Cat # C0750), and 79-6 (Calbiochem, Cat # 197345) were diluted and stored per manufacturer recommendations. For in vitro experiments drug stocks were diluted in base media and for in vivo experiments stocks were diluted in saline immediately prior to use. In vitro concentrations of Ara-C [1 μM], MTX [50 μM], VCR [25 μM], MG-132 [1-5 μM], Caffeine [2.5-10 mM], and 79-6 [125 μM] were used to approximate clinically relevant doses in ALL or published in vitro concentrations [27 (link), 57 (link)- 63 (link)].
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5

Kinase Inhibitor Drug Evaluation

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The drugs 753B, DT2216, and QVD (a pan-caspase inhibitor) were kindly provided by Prof. Zhou at the University of Texas Health Science Center and Prof. Zheng at the University of Florida. Venetoclax (ABT-199), Navitoclax (ABT-263), cytarabine (Ara-C) and S63845 were purchased from Selleckchem (Pittsburgh, PA, USA).
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