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6 protocols using ge10600001

1

Western Blot Analysis of Protein Expression

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Protein extracts were quantified by DC Protein assay (Bio-Rad), and equal amounts of proteins were separated by SDS-polyacrylamide gel electrophoresis. After transfer of the proteins onto a nitrocellulose membrane (GE10600001, Sigma) for 1 hr at 100 mV, membranes were blocked in 5% milk, and specific proteins were labeled with the following antibodies: CPEB4 (Abcam Ab83009/clone 149C/D10, monoclonal homemade); HuR (3A2, sc-5261 Santa Cruz); HIF1a (Cayman 10006421); phospho-p44/42 (Erk1/2) (Thr202/Try204) (Cell Signaling clone E10, 9106); SOCS1 (Abcam Ab9870); phospho-p38 (Thr180/Y182) (Cell Signaling, 9211S); p38α (C-20)-G (Santa Cruz, sc-535-G); phospho-MAPKAPK2 (Thr222) (Cell Signaling, 3044S), TTP (D1I3T) (Cell Signaling, 71632), and vinculin (Abcam Ab18058). Quantification was done with ImageStudioLite software, and protein expression was normalized by the loading control signal.
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2

Murine PDL1 and CTLA4 Protein Binding

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Recombinant protein of murine PDL1 (SinoBiological, 50,010-M08H) or CTLA4 (SinoBiological, 50,503-M08H) were bound to a nitrocellulose membrane (Sigma, GE10600001) in 10 µl drops containing 0.25 µg of protein (25 µg/ml). The membrane was then blocked with 5% skim milk diluted in TBS-Tween 0,1% (TBS-T) for 1 h. at room temperature. Filtered supernatants of Mfr were then applied to their respective spots on the membrane for 2 h. at room temperature. Then, anti-Hibit primary antibody (1:1000) (Promega, N7200) was then applied diluted in 3% skim milk TBS-T for either 1 h. at room temperature. After washing with TBS-T three times, the secondary antibody (Sigma, A6782) was applied in a 1:10000 dilution for 1 h. at room temperature. The Femto substrate mix (Thermo, 34,094) was used to reveal the signal on an iBright CL 1500 equipment (Thermo).
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3

Western Blot Analysis of CPEB4 in Colon Tissues

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Colon tissues or colon tumors were extracted, frozen and pulverize using a liquid nitrogen-cooled mortar. The same amount of powder samples was lysed in buffer containing 1% NP40, 150 mM NaCl, 50 mM Tris HCl pH 7.5, 2 mM EDTA, 2 mM EGTA, 20 mM sodium fluoride, 2 mM PMSF, 2 mM sodium orthovanadate, 1 mM DTT and 1x EDTA-free complete protease inhibitor cocktail (Roche, #11873580001), and sonicated at high intensity for 5 min with Standard Bioruptor Diagenode. Protein content was quantified using DC Protein Assay (Biorad), and 30 μg of total protein lysate in Laemmli buffer was separated on SDS-PAGE and transferred to nitrocellulose membrane (GE10600001, Sigma). After blocking (5% non-fat milk and 1% BSA in PBS, 1hat room temperature) membranes were incubated at 4°C overnight with anti-CPEB4 (Abcam) or anti-CPEB4 monoclonal (149C/D10, homemade) primary antibodies or at room temperature for 1 h with anti-vinculin (ab130007, AbCam) and anti-b-Actin (ab8224, AbCam) primary antibodies. After incubation with secondary antibodies for 1hat room temperature, the membranes were incubated with Amersham ECL™ Western Blotting Detection Reagents (GERPN2106, Sigma).
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4

Western Blot Analysis of CPEB Proteins

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Beads-homogenized tissue or MECs (EasySep, STEMCELL Technologies) were lysed in ice-cold radioimmunoprecipitation assay (RIPA) lysis buffer (with phosphatase and protease inhibitors) and sonicated for 5 min at high or low intensity, respectively (Standard Bioruptor Diagenode). Cellular debris was pelleted (15,700g, 15 min, 4°C), and protein concentration was determined by the DC Protein Assay (Bio-Rad). Equal amounts of proteins were separated by SDS–polyacrylamide gel electrophoresis. After transfer onto nitrocellulose membranes (Sigma-Aldrich, GE10600001), membranes were blocked for 1 hour in 5% milk, and specific proteins were labeled with the corresponding primary antibodies against vinculin (Abcam, ab18058), CPEB3 (Abcam, ab10883), CPEB219, CPEB4 (Abcam, ab83009), CPEB1 (Cell Signaling Technology, no. 13583), CyclinD1 (Santa Cruz Biotechnology, sc-717), CREB1 (Cell Signaling Technology, no. 9197), α-tubulin (Sigma-Aldrich, T9026), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH; Life Technologies, AM-4300). Secondary HRP antibodies were also diluted in 5% milk, and proteins were revealed using enhanced chemiluminescence Western blotting detection reagents (GE Healthcare).
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5

Protein Quantification and Western Blotting

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Protein extracts were quantified by DC Protein assay (Bio-Rad), and equal amounts of proteins were separated by SDS–polyacrylamide gel electrophoresis. After transfer of proteins onto a nitrocellulose membrane (GE10600001, Sigma) for 1 h at 400 mA, membranes were blocked for 1 h in 5% milk, and specific proteins were labeled with the mentioned antibodies.
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6

Immunoprecipitation and Western Blot Analysis

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20 μg of whole cellular protein were denatured in sodium dodecyl sulfate (SDS) loading dye as input. For IP samples, the washing buffer was completely removed and proteins were eluted from the beads with SDS loading dye (without dithiothreitol (DTT)) for 5 min at 55°C. The eluate was mixed with SDS loading dye (with DTT) and denatured. Proteins were separated by SDS-polyacrylamide gel electrophoresis and transferred onto a nitrocellulose membrane (Amersham Protran, GE10600001, Sigma-Aldrich) by the wet transfer method. The membrane was blocked in blocking solution (1x PBS, 1% polyvinylpyrrolidone, 1% non-fat dried milk, 0.1% Tween-20, 0.01% sodium azide, pH 7.4) and incubated with following primary antibodies: FLAG M2 (F1804, Sigma), HDAC1 (polyclonal rabbit SAT208, Seiser lab), HDAC2 (ab7029, Abcam), HDAC3 (ab7030, Abcam), HDAC8 (sc11405, Santa Cruz), COREST (RCOR1, 07–455, Millipore), β-actin (ab8226, Abcam or ab8227, Abcam), vinculin (13901S, Cell signaling). ECL Western blotting detection reagents (RPN2106, GE Healthcare) were used for detection together with a FUSION FX chemiluminescence imaging system.
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