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5 protocols using rabbit anti mmp 9 antibody

1

Immunofluorescence Analysis of Mouse Eye Tissues

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At 6 h and 1 day post-CNV induction, enucleated mouse eyes were fixed in 4% paraformaldehyde for 1 h at room temperature, cryoprotected in 30% sucrose at 4°C overnight, and embedded in OCT compound. Eyes were cryosectioned to 15 μm thickness. For immunofluorescence, sections were blocked in a blocking buffer (0.5% Triton, 0.2% BSA, and 5% donkey serum in PBS) for 1 h at room temperature and subsequently incubated with primary antibodies overnight at 4°C. After washing, samples were incubated with secondary antibodies for 1 h at room temperature. Goat anti-Iba1 antibody (1:250; FUJIFILM Wako Pure Chemical Corporation, Osaka, Japan, 011-27991), rabbit anti-TMEM119 (1:500, Synaptic Systems, Göttingen, Germany, 400 002), rat anti-CD31 (1:100, BD Biosciences, NJ, USA, 553370), and rabbit anti-MMP-9 antibody (1:100; Abcam, Cambridge, MA, USA, ab38898) were used for primary antibodies, and Alexa Fluor 488-conjugated donkey anti-goat antibody (1:500; Thermo Fisher Scientific, Waltham, MA, USA, A11055), Alexa Fluor 594-conjugated donkey anti-rabbit antibody (1:500; Thermo Fisher Scientific, A21207), and Alexa Fluor 647-conjugated donkey anti-rat antibody (1:500; Jackson Immuno Research Laboratories, INC., PA, USA, 712-605-15) were used for secondary antibodies.
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2

Evaluating NP Size Effects on MMP-9 and ICAM-1

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For western blot analysis, A549 and 95D cells were plated on culture flasks and treated with Au-NPs (control, 5 nm, 10 nm, 20 nm, and 40 nm). After 48 h, 5–10×106 cells were harvested and lysed with ice-cold lysis buffer. Equal amounts of protein were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and electrophoretically transferred onto polyvinylidene fluoride membranes. Membranes were blocked with 5% non-fat dry milk for 2 h and incubated overnight at 4°C with rabbit anti-MMP-9 antibody (1∶1000, Abcam), rabbit anti-ICAM-1 antibody (1∶500, Cell Signaling), or mouse anti-GAPDH antibody (1∶10000, Abmart). GAPDH was used as the housekeeping gene control and the expression levels of the MMP9 and ICAM-1 were normalized with respect to GAPDH. The proteins were detected with horseradish peroxidase-conjugated anti-rabbit or anti-mouse secondary antibodies and visualized with chemiluminescence reagents provided with the ECL kit (BioRad, USA). Immunoreactive bands were detected by enhanced chemiluminescence and quantified using a ChemiDoc XRS molecular imager (BioRad).
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3

Protein Expression Analysis by Western Blotting

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The protein expression was assessed by Western blotting. Primary antibodies, i.e., mouse anti-α-SMA antibody (SMA, Sigma-Aldrich, A2547), rabbit anti- MMP-9 antibody (Abcam, Cambridge, UK, ab76003), mouse anti-Toll-like receptor-4 (TLR-4) antibody (Abcam, ab30667), and mouse anti-β-actin antibody for internal control (Sigma-Aldrich, A5411) were reacted with the polyvinylidene fluoride (PVDF) membrane at 4 °C overnight. Subsequently, the corresponding secondary antibodies were immersed at room temperature for 1 h. The protein bands were quantified using Image J software and normalized using individual internal controls for comparison [17 (link),18 (link)].
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4

Immunohistochemistry of MMP9 and p65 in LX-2 cells and liver tissues

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For MMP9 and p65 immunostaining, LX-2 cells were fixed with 4% paraformaldehyde for 2 h at room temperature. Antigens were retrieved by incubation in the 10 mM citrate buffer for 20 min. The cells were then incubated with rabbit anti-MMP-9 antibody (1:200, Abcam) or mouse anti-p65 (1:200, Cell Signaling Technology). The specifically bound primary antibodies were detected with Alexa 488-conjugated antirabbit or anti-mouse IgG antibodies (Thermo Fisher Scientific), respectively. The unbound antibodies were rinsed off by PBS. After counterstaining with DAPI for the nucleus, the images were captured with a confocal microscope (Zeiss LSM 510). For liver tissues, the sections were rehydrated and incubated with anti-neutrophil elastase (NE) (1:500) antibody overnight as described previously (Xin et al., 2007 (link)). Specifically bound antibodies visualized with the immunohistochemistry kit (MX Biotechnologies, Fuzhou, CN) according to the manufacturer’s protocol. Hematoxylin was used for counterstaining.
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5

Quantifying Extracellular Matrix Regulators

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The expression levels of TIMP3, latent forms of MMP2 and MMP9 were measured by western blot analysis. The HUVECs harvested for western blot analysis were lysed by RIPA lysis buffer (50 mM Tris (pH 7.4), 150 mM NaCl, 1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS, 1 mM sodium orthovanadate, 2 mM sodium fluoride, 1 mM EDTA, 0.5 μg/ml leupeptin, 0.7 μg/ml Pepstatin A, 50 μg/ml PMSF, 2.2 μg/ml Aprotinin), and the protein concentrations were determined using a BCA protein assay kit (Pierce). The protocol was performed as described previously[16 (link)]. The primary antibodies used in this study were as follows: rabbit-anti-TIMP3 antibody (1:1000, Abcam), mouse-anti-MMP2 antibody (1:1000, Abcam), rabbit-anti-MMP9 antibody (1:1000, Abcam) and anti-GAPDH antibody (1:1000, Abcam) as an internal control.
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