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Tcc 3000

Manufactured by Thermo Fisher Scientific
Sourced in United States, Germany

The TCC-3000 is a compact, benchtop Thermal Cycler for DNA amplification and quantification. It features a simple, intuitive interface and supports standard PCR protocols.

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14 protocols using tcc 3000

1

RP-HPLC Analysis of Azacitidine

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HPLC analysis was performed on a Thermo Scientific Dionex Ultimate 3000 HPLC system (Thermo Scientific, Bremen, Germany) equipped with an LPG-3400SD pump, TCC-3000 column oven, and UV VWD-3100 detector.
According to the United States Pharmacopeia’s (USP) pending monograph for azacitidine [34 ] and certificate of analysis (CoA) of azacitidine reference material supplied by Merck Life Science S.r.l. (Milan, Italy), the HPLC analysis using a reversed-phase high-performance liquid chromatography (RP-HPLC; Ascentis Express C18, 150 mm × 4.6 mm, 2.7 μm; Merck Life Science S.r.l. (Milan, Italy) with a linear A-B gradient (0–4.8 min 0% B, 4.8–12 min 0% to 15% B, 12–15 min 15% B, 15–18 min 15% to 30% B, 18–24 min 30% to 50% B, 24–27 min 50% to 0% B, 27–33 min 0% B) at a flow rate of 0.8 mL/min and a total run time of 33 min was performed. Solvent A consisted of 1.54 g/mL ammonium acetate in water (0.02 M, pH 6.9 ± 0.1) and solvent B consisted of solvent A:methanol:acetonitrile (50:30:20).
UV absorbance was measured at 210 nm. The column temperature was kept at 30 °C. The injection volume was 20 μL.
The Chromeleon data system software (Version 7.2.8) was used for data acquisition and mathematical calculations.
The extensive validation of the analytical method was carried out according to ICH Q2(R1) guidelines [27 ] (see Supplementary Materials).
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2

Sample Preparation for UHPLC Analysis

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This analysis was developed following the methodology described by Polanía, Londoño, Ramírez, and Bolívar (2022) [30 (link)]. Briefly, the samples analyzed were prepared by dissolving the sample in a mixture of methanol: 0.2% water in formic acid (1:1), mixing (5 min), sonication (5 min), filtering, and subsequent injection into the chromatographic equipment. An ultra-high efficiency liquid chromatograph (UHPLC), Dionex Ultimate 3000 (Thermo Scientific, Sunnyvale, CA, USA), equipped with a binary gradient pump (HP G3400RS), an automatic sample injector (WPS 300TRS) and a thermostated column unit (TCC 3000), was used.
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3

HPLC-MS Analysis of Compounds

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A high-performance liquid chromatography (HPLC) system consisting of an LPG-3400 pump (Thermo Scientific, Tokyo, Japan) with flow control valve, auto sampler (WPS-3000), and temperature controller compartment for the column (TCC-3000) was utilized in this study. Separation was performed in gradient mode with a flow rate of 0.5 ml min−1 over a 5-min run time through a reversed phase C18 column. A CAPCELL PAK C18MG II (250 mm × 4.6 mm i.d., Shiseido, Tokyo, Japan) HPLC column was used. The temperature for the auto sampler and column oven was maintained at 10°C and 30°C, respectively. The chromatographic run was performed with a gradient, and the mobile phase consisted of solvent A (HPLC grade water + 0.05% formic acid) and solvent B (HPLC grade acetonitrile + 0.05% formic acid) with a “T” switch tube only 200 μl/min of total flow (0.5 ml/min) introduced into the mass spectrometry (MS) detector.
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4

Quantitative Analysis of Erinacine A in Hericium erinaceus Mycelium

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We weighed 1 g of the Hericium erinaceus mycelium powder and extracted it with 5 mL of 50% methanol using ultrasonic technology. The resulting mixture was then centrifuged at 3000× g for 5 min, and this procedure was repeated once. The supernatant was filtered using ADVANTEC NO.1 membranes and diluted with 50% methanol to a final volume of 10 mL. Prior to HPLC analysis, the solution was filtered through a 0.22 µm PVDF syringe filter and degassed.
HPLC analysis of erinacine A was performed on a Thermo Scientific Dionex Ultimate 3000 HPLC system (Thermo Scientific, Bremen, Germany) equipped with a quaternary rapid separation pump (LPG-3400SD), TCC-3000 temperature-controlled column (40 °C), and DAD-3000 diode array detector, as previously described, with minor modifications [35 (link)]. Chromatographic separations were achieved on an InertSustain C-18 (250 × 4.6 mm, 5 μm) with a linear A–B gradient (0–20 min 66% B to 70% B, 25–35 min 70% B to 100% B) at a constant flow rate of 1 mL/min and a total run time of 35 min. Solvent A consisted of 0.2% H3PO4 in Milli-Q water and solvent B of 100% methanol. The absorption spectra of eluted compounds were detected at 340 nm using Dionix Chromeleon software (Version 6.80, Service Release SR14).
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5

Quantitative Analysis by Orbitrap MS

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An Ultimate 3000 system (Thermo Fisher Scientific, Dionex, Sunnyvale, CA, USA) consisting of a binary pump (HPG-3400RS), an autosampler (WPS-3000), a column compartment (TCC-3000), and an online degasser was used for chromatography separation. Quantitative analysis was performed by using a quadrupole-orbitrap mass spectrometer equipped with an electrospray ionization (ESI) interface and an orbitrap mass analyzer (Thermo Fisher Scientific, San Jose, CA, USA).
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6

Pesticide Quantification Using LC-MS/MS

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The LC system was a Dionex UltiMate 3000 liquid chromatograph system (Dionex, CA, USA) with a quaternary pump (HPG-3400RS), autosampler (WPS-3000) and column oven (TCC-3000) equipped with a reversed-phase Syncronis C18 column (100 mm × 2.1 mm I.D., 1.7 μm particle size) from Thermo Scientific (San Jose, CA, USA). The column temperature was maintained at 40 °C, and the injection volume was 5 μL. Mobile phase A was water with 0.1% formic acid, and mobile phase B was acetonitrile. The separation was performed at a flow rate of 0.4 mL/min, and the gradient elution was 0–18 min, linear gradient 20%–100% B, held for 2 min; 20–21 min, linear gradient 100%–20% B, held for 2 min.
The LC system was connected to a Thermo Scientific TSQ Quantum Access MAS triple stage MS/MS (San Jose, CA, USA) equipped with an electrospray ionization (ESI) source in the positive and negative ion mode. The SRM mode was used, and the m/z ratios of all target pesticides are listed in Supplementary MaterialsTable S4, along with the tube lens voltage and the collision energy. The capillary temperature, vaporizer temperature, aux gas (N2) pressure and sheath gas (N2) pressure were set to 300 °C, 300 °C, 15 Arb and 35 Arb, respectively. The spray voltage for positive and negative polarity was set to 3500 V and 2300 V, respectively.
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7

Isocratic RP-HPLC Analysis of Compounds

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The isocratic RP-HPLC method was carried out using Thermo Scientific™ Dionex-UltiMate™ 3000 HPLC system equipped with solvent reservoirs, LPG-3400SD pump, WPS-3000 autosampler injector, TCC-3000 column oven, and DAD-3000 ultraviolet-visible (UV-Vis) diode array detector module operated at four wavelengths per analysis. Chromeleon data software (Version 7) was used for data analysis.
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8

HPLC-MS Analysis of Compounds

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HPLC/MS was performed on a Thermo Scientific Dionex Ultimate 3000 consisted of a quaternary (HPG-3400RS) pump, a WPS-3000 (TSL) analytical auto-sampler, a TCC-3000 column oven, and a TSQ Endura (Thermo Fisher Scientific) triple quadrupole equipped with heated-electrospray ionization (H-ESI). The separation was performed on a Eurospher II 100-5 C18 vertex plus column (250 4.6 mm, 5m) at 25 °C. The mobile phases were composed of acetonitrile (A) and water/0.1% formic acid (B) with an elution program as follows: 20% of (A) for 8.6 min and 85% of (A) for 5.4 min. The solvent system flow rate was set to 1.0 mL min−1, and the sample injection volume was 20 L. UV–Vis detection was monitored at 260 nm, while DAD acquisition was done between 200 and 600 nm.
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9

Metabolite Profiling by UPLC-Orbitrap-HRMS

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2 µL of each sample were analysed on a UPLC-Orbitrap-HRMS instrument (Thermo Fisher Scientific, Bremen, Germany) composed of an UltiMate® 3000 high performance liquid chromatography system equipped with a HPG-3400RS dual pump, a TCC-3000 column oven and a WPS-3000 auto sampler coupled to a Q-Exactive™ Plus Orbitrap mass spectrometer.
Chromatographic separation was performed on a Thermo Scientific Accucore™ RP-MS column (100 x 2.1 mm, 2.6 µm) with water (mobile phase A) and methanol (mobile phase B).
A gradient elution programme at a flow rate of 400-500 µL min -1 was applied as shown in Trace Finder™ version 3.3 software (Thermo Fisher Scientific, Bremen, Germany) was used to process raw data files, while quantification of the compounds of interest was conducted using Microsoft Excel 2010.
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10

HPLC Analysis Using Dionex Ultimate 3000

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The HPLC analysis was performed using a Dionex Ultimate 3000 liquid chromatograph (Thermo Fisher Scientific, Courtaboeuf, France) equipped with the following parts: FLD-3400 RS fluorescence detector, DAD-3000 diode array detector, LPG-3400 SD pump, WPS-3000 TSL autosampler, and TCC-3000 SD column component. Monitoring, data recording, and processing were driven with the CHROMELEON 7 software (Dionex).
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