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6 protocols using azidothymidine

1

Synthesis and HIV-1 Inhibition Assays

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Compounds 13 and 21 were synthesized as previously reported [30 (link)]. The inhibitors: azidothymidine (AZT); efavirenz (EFV); nevirapine (NVP) and raltegravir (RAL) were purchased form Sigma-Aldrich (St. Louis, MO, USA). RNase H inhibitor was kindly provided by Prof. Roberto Di Santo. MT4 (ECACC 08081402) and HEK 293 T cells (ATCC® CRL-3216TM) were cultured in RPMI 1640 medium and Dulbecco’s modified Eagle’s medium (DMEM) (Gibco, Waltham, MA, USA), respectively. Both media were supplemented with 10% fetal calf serum (FCS) (Gibco, Waltham, MA, USA) and 1% penicillin/streptomycin. Stocks of HIV-1 NL4-3 strain were prepared by transfecting 293 T cells with the HIV-1 pNL4-3. The VSV-pseudotyped, NL4-3–GFP expressing virus (VSV/HIV-1GFP) was generated as reported [32 (link)].
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2

Pharmacological Compounds Evaluation

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Clozapine N-oxide was purchased from Sigma-Aldrich and DMSO (0.5%) in saline was used as a vehicle. Azidothymidine [3-azido-3-deoxythymidine (AZT)] and Metyrapone were purchased from Sigma-Aldrich. Dexamethasone was purchased from China National Pharmaceutical Group Corporation.
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3

Preparing Stock Solutions of Nucleoside Analogs

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Gemcitabine, azacytidine, and decitabine were purchased from LC Labs. Fludarabine, azidothymidine, and cladribine were purchased from Tocris. Cytarabine was purchased from Selleck Chemicals. Puromycin, nucleosides, nucleotides, and dCTP isotope were purchased from Sigma. Isotopes of deoxycytidine, deoxythymidine, deoxyguanosine, and deoxyadensoine were purchased from Cambridge Isotope Laboratories. Deoxyuridine isotope was purchased from Santa Cruz. Cytarabine, decitabine, azidothymidine, and azacytidine were dissolved in DMSO (Sigma) at 50–100mM and stored at −80°C until use. Working stocks were diluted to 5mM in 100% ethanol (VWR) and stored at −20°C until use. Fludarabine and cladribine were dissolved in DMSO at 50mM, then divided to 100 μL aliquots. Aliquots were stored at −80°C. Aliquots were diluted in DMSO to 5mM and divided to 10 μL aliquots and stored at −20°C, to reduce freeze/thaw cycles. Puromycin was dissolved in sterile water at 50mM and stored at −20°C. Gemcitabine was dissolved in DMSO at 10mM and stored at −20°C. nucleosides were dissolved in sterile water at 10mM and stored at −80°C. Nucleoside and nucleotide isotopes were dissolved in HPLC-grade water (Sigma) at 1mM and stored at −80°C.
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4

Quantification of HIV-1 Inhibition Assays

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Recombinant human IFN-α was obtained from R&D Systems, Inc. The HIV-1 reverse transcriptase (RT) inhibitor azidothymidine (AZT); the chemical antagonist of CCR2, RS102895, Cytochalasin D (CytD) and paraformaldehyde were purchased from Sigma-Aldrich. Pertussis toxin (Bordetella pertussis, glycerol solution) was from Calbiochem. TURBO DNase I was from Ambion. The HIV-1 fusion inhibitor T20 peptide was a kind gift from Dr. Lai-Xi Wang at the Institute of Human Virology.
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5

Cytotoxicity Evaluation of Chalcone Derivatives

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Materials. The following chemicals and reagents were obtained from the indicated companies: Dulbecco's modified Eagle's medium (DMEM), from GIBCO BRL, Grand Island, NY, USA; fetal bovine serum (FBS), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), doxorubicin, azidothymidine, 2',3'-dideoxycytidine from Sigma-Aldrich Inc., St. Louis, MO, USA; dimethyl sulfoxide (DMSO), dextran sulfate (molecular mass, 5 kDa) from Wako Pure Chem. Ind., Osaka, Japan; methotrexate from Nacalai Tesque, Inc., Kyoto, Japan; curdlan sulfate (molecular mass: 79 kDa) from Ajinomoto Co. Ltd., Tokyo, Japan. Culture plastic dishes and plates (96-well) were purchased from Becton Dickinson (Franklin Lakes, NJ, USA). 12), (2E)-1-(4-methoxyphenyl)-3-(4-methoxyphenyl)-2-propen-1-one ( 13), (2E)-3-(2,4-dimethoxyphenyl)-1-(4methoxyphenyl)-2-propen-1-one ( 14), (2E)-1-(2,4-dimethoxyphenyl)-3-(4-methoxyphenyl)-2-propen-1-one (15) (structures shown in Figure 1) were synthesized by base-catalyzed condensation of the appropriate acetophenone with selected benzaldehyde derivatives according to previous methods (17) . All compounds were dissolved in DMSO at 40 mM and stored at -20˚C before use.
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6

Maintenance of HIV-1 Latency in ACH-2 Cells

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Park Memorial Institute 1640 medium (Sigma) with 10% heat-inactivated foetal bovine serum (Sigma), penicillin (100 U/mL) and streptomycin (100 µg/mL). To maintain HIV-1 latency in ACH-2 cells, 20 μM azidothymidine (Sigma) was added to the culture medium but was excluded prior to conducting the experiments. The cells (2.0 × 10 6 cells/2.0 mL medium/well) were treated with butyric acid. HeLa cells and TZM-bl cells, a HeLa-derived cell line expressing surface CD4, CXCR4 and CCR5 containing a chromatinintegrated HIV-1 LTR [24, 25] were grown at 37°C in Dulbecco's modified Eagle's medium (Sigma) with 10% heat-inactivated foetal bovine serum.
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