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13 protocols using dasatinib

1

Mammary Epithelial Cell Differentiation

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Cells from digested mammary glands were seeded at 40,000 cells per well onto MEF’s (for colony formation assays) or 8-well chamberslides (Lab-Tek) coated with 2% Matrigel/DMEM. At the time of seeding, cells were suspended in complete DMEM medium supplemented with vehicle (0.1% BSA/PBS), RANKL (50 ng ml−1), TGFβ1 (5 ng ml−1) or TGFβ2 (5 ng ml−1) (Peprotech). Cells were fixed with 2% paraformaldehyde/PBS after 48 h (chamberslides) or 5 days (colonies) for immunofluorescent staining.
For experiments with MCF10A and HMECs, TGFβ2 stimulations were performed with 5 ng ml−1 TGFβ2 (Peprotech) or 0.1% BSA/PBS (vehicle) for 48 h prior to lysis. In some experiments 30 ng ml−1 of the anti-αvβ3 function blocking antibody LM609 (Millipore) was added to cells at the same time as TGFβ2 or vehicle addition. For the proteasome inhibitor experiments, 10 μM MG132 (Sigma) or DMSO (vehicle) was added to transfected MCF10A cells 5 h prior to lysis. Treatment of MCF10A cells with the Src family kinase inhibitor Dasatinib (Chemietek) or DMSO (vehicle) was performed with 100 nM Dasatinib for the indicated times prior to harvesting lysates.
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2

TGF-beta Signaling Pathway Inhibitors Protocol

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Polyclonal anti-Shc1 antibody was obtained from Thermo Scientific Pierce (Rockford, IL), and polyclonal anti-MADH7 (Smad7) antibody was purchased from Abcam Inc. (Cambridge, MA). Anti-HDAC2 was purchased from Millipore (Billerica, MA). The following antibodies were purchased from Cell Signaling Technology (Danvers, MA): anti-pSma2 (linker and COOH specific phosphorylation), anti-Smad2, anti-pSmad3, anti-Smad3, anti-pAKT, anti-pERK, anti-BIM, anti-PARP, and anti-GAPDH. Recombinant human TGFβ-1 protein was purchased from R&D Systems (Minneapolis, MN) and reconstituted in 4 mM HCL and 1 mg/mL bovine serum albumin solution. Dasatinib and erlotinib were obtained from ChemieTek (Indianapolis, IN) and diluted in DMSO. LY-364947 was purchase from Sigma-Aldrich (St. Louis, MO). AZD0530 was obtained from AstraZeneca (London, UK).
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3

Targeted Drug Screening Protocol

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Bosutinib, masitinib and midostaurin (PKC412) were purchased from LC Laboratories (Woburn, MA, USA), ponatinib from Selleck Chemicals (Houston, TX, USA), piceatannol and pimozide from Sigma Aldrich (San Louis, MO, USA), and dasatinib, sorafenib, sunitinib, tozasertib, vorinostat, everolimus (RAD001), erlotinib, gefitinib, and lapatinib from ChemieTek (Indianapolis, IN, USA). Imatinib, nilotinib, and BEZ235 were kindly provided by Dr.E.Buchdunger and Dr.P.W.Manley (Novartis, Basel, Switzerland). Stock solutions of drugs were prepared by dissolving in DMSO (Merck, Darmstadt, Germany). A specification of targeted drugs is shown in Supplementary Table S1. RPMI 1640 medium and fetal calf serum (FCS) were from PAA Laboratories (Pasching, Austria), 3H-thymidine from Amersham (Buckinghamshire, United Kingdom), and the Annexin V-FITC Kit from eBiosciences (San Diego, CA, USA). Recombinant human (rh) stroma cell-derived factor-1 alpha (SDF-1α) and rh eotaxin were purchased from R&D Systems (Minneapolis, MN, USA), and rh interleukin-5 (IL-5) from BD Bioscience (San José, CA, USA). A specification of monoclonal antibodies (mAb) used in this study is shown in Supplementary Table S2.
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4

Identifying Anti-Neoplastic Drug Candidates

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A number of anti-neoplastic drugs were tested for their ability to inhibit growth of MM cells: the tyrosine kinase inhibitors (TKI) bosutinib, dasatinib, imatinib, sorafenib, sunitinib, and nilotinib, the ErbB-receptor inhibitors lapatinib, erlotinib, and gefitinib, the Aurora-kinase inhibitor VX-680, the HSP90 inhibitor 17AAG, the PLK-1 inhibitor BI2536, the pan-BCL-2 antagonist obatoclax, and the HDAC-inhibitor vorinostat were purchased from Chemietek (Indianapolis, IN, USA). The PI3 kinase/mTOR inhibitor BEZ235 was obtained from Selleck Chemicals (Houston, TX, USA). Stock solutions of drugs were prepared by dissolving in dimethylsulfoxide, DMSO (Merck, Darmstadt, Germany). RPMI 1640 medium and fetal calf serum (FCS) were purchased from PAA Laboratories (Pasching, Austria), and 3H-thymidine from PerkinElmer (Waltham, MA, USA). FITC-labeled CD34 monoclonal antibody (mAb) 581, PE-labeled CD34 mAb 581, FITC-labeled CD138 mAb MI15, PE-labeled CD138 mAb DL-101, PerCP-labeled CD45 mAb 2D1, APC-labeled CD38 mAb HIT2, PE-labeled and Alexa Fluor® 647-labeled active caspase-3 mAb C92-605 were purchased from BD Biosciences (San Jose, CA, USA). The PerCP-labeled CD20 mAb 2H7 and the APC-labeled CD27 mAb O323 were obtained from Biolegend (San Diego, CA, USA), and an Annexin V/FITC kit from eBioscience (San Diego, CA, USA).
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5

Tyrosine Kinase Inhibitor Assays

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Bosutinib was purchased from Selleck (Houston, TX) and dasatinib (BMS 354825) from Chemietek (Indianapolis, IN). Stock solutions of drugs were prepared by dissolving in dimethyl-sulfoxide (DMSO) (Merck, Darmstadt, Germany). RPMI 1640 medium, fetal calf serum (FCS) and antibiotics were purchased from PAA laboratories (Pasching, Austria), 3H-thymidine from Amersham (Buckinghamshire, UK) and propidium iodide (PI) from Sigma (St. Louis, MO).
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6

Immunostaining and Small Molecule Inhibitors

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VEC pY658 antibody used for immunostaining was developed by E. Dejana (Orsenigo et al., 2012 (link)). PF-562271 (PF-271) was synthesized by Laviana Corporation as previously described (Roberts et al., 2008 (link)). The resulting material was 98% pure by HPLC with mass verified by MS and nuclear magnetic resonance (Laviana Corporation). PND-1186 was obtained from Poniard Pharmaceuticals. For cell culture, PF-271 and PND-1186 were dissolved in DMSO. Dasatinib was obtained from ChemieTek. Additional antibody and reagent information is provided in Table S1.
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7

Src and p300 Inhibitor Protocol

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The Src inhibitor dasatinib (ChemieTEK, Indianapolis, IN) and the p300 inhibitor C646 (Sigma Aldrich, St. Louis, MO) were purchased from the designated sources. Antibodies used were as follows: Src (B-12), p300 (C20), GAPDH (6C5), β-Tubulin (C10), Grim19, (Santa Cruz Biotechnology, Santa Cruz, CA), Src (36D10), pY-416 Src (2101), HMGA2 (D1A7), SMYD3 (D2Q4V), Lamin A/C (#2032), Calnexin (C5C9), HDAC1 (10E2), Histone H3 (D1H2), p-TYR-100 (Cell Signaling Technology, Danvers, MA), pY418 Src (92633), p300 (507) (Novus Biologicals, Littleton, CO), HMGA2 (AF3184) (R&D Systems, Minneapolis, MN), and SMYD3 (ab16027) (Abcam, Cambridge, UK). Secondary antibodies used were Donkey-anti-Rabbit 800CW and Goat-anti-Mouse 680LT (Licor, Lincoln NE).
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8

Mab Specification and Reagents Used

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A specification of mAb used in this study is shown in Table 1. The ErbB-targeting drugs canertinib, BIBW2992, and BMS-599626, the KIT kinase blockers nilotinib, midostaurin (PKC412) and dasatinib, and the insulin-like growth factor-1 receptor (IGF-1-R) blocker OSI-906, were from Chemietek (Indianapolis, IN). The irreversible ErbB inhibitor pelitinib and the CD33-targeting antibody-conjugate gemtuzumab ozogamicin (mylotarg) were kindly provided by Wyeth (Cambridge, MA). Recombinant human (rh) stem cell factor (SCF) was purchased from Peprotech (Rocky Hill, NJ), rh erythropoietin (EPO) and rh transforming growth factor-β1 (TGF-β1) from R&D Systems (Minneapolis, MN), and rh Heregulin-α (EGF-domain) from Sigma-Aldrich (St. Louis, MO). Dulbecco's modified eagle medium (DMEM) and fetal calf serum (FCS) were from Gibco Life Technologies (Gaithersburg, MD).
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9

Cytotoxicity Assay for Multiple Myeloma

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Melphalan, adriamycin, vincristine, RPMI1640 medium, pepstatin, leupeptin, calpain inhibitor, phosphatase inhibitor cocktail I/II, and phenylmethylsulfonyl fluoride were purchased from Sigma (St. Louis, MO, USA). Dexamethasone, verapamil, 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES), Tris-HCl (pH 7.4), EDTA, NP-40, sodium orthovanadate, and bicinchoninic acid protein-assay kit were purchased from Wako (Tokyo, Japan). Dasatinib was purchased from ChemieTek (Indianapolis, USA). Fetal bovine serum, penicillin, and streptomycin were purchased from Gibco (Carlsbad, CA, USA).
Melphalan, Dexamethasone, and Dasatinib were soluble in dimethyl sulfoxide, attenuated in phosphate-buffed saline (PBS); pH 7.4, and filtrated through 0.45 μm syringe (Iwaki Glass, Tokyo, Japan) filter before use. adriamycin and vincristine were soluble in PBS. verapamil was soluble in ultrapure water, and filtrated through 0.45 μm syringe (Iwaki Glass) filter before use.
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10

Immune Cell Activation and Inhibition Assay

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The anti‐IgE mAb E124.2.8 (Dε2), the fluorescein isothiocyanate (FITC)‐labeled mAb CLB‐gran12 (CD63), and phycoerythrin (PE)‐conjugated mAb 97A6 (CD203c) were purchased from Immunotech (Marseille, France), and human IgE from Merck Millipore (Billerica, MA, USA). A detailed description of mAb is listed in Table S1. The BTK inhibitors ibrutinib (PCI‐32765), AVL‐292, and CNX‐774 were purchased from Selleck Chemicals (Riverside, CA, USA), dasatinib from ChemieTek (Indianapolis, IN, USA), and the SYK inhibitor P505‐15 from Axon Medchem (Groningen, the Netherlands). Table S2 shows the target profiles of the kinase blockers used in this study. Stock solutions of drugs were prepared by dissolving in dimethyl sulfoxide (DMSO) (Merck, Darmstadt, Germany). The recombinant (r) allergens rDer p 2 and rPhl p 5 were obtained from Biomay (Vienna, Austria). Histamine release buffer (HRB) and histamine radioimmunoassay (RIA) kit were purchased from Immunotech, and RPMI 1640 medium, Iscove's modified Dulbecco's medium (IMDM), and fetal calf serum (FCS) from Thermo Fisher Scientific (Waltham, MA, USA).
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