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10 protocols using anti sfrp1

1

Western Blot Analysis of SFRP1

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Proteins were isolated and resolved by SDS–PAGE, and then transferred to PVDF membranes. The PVDF membrane was blocked for 1 h in 5% non-fat milk dissolved in tris-buffered saline-Tween 20. The PVDF membrane was incubated with anti-SFRP1 (Abcam, Cambridge, MA, USA) or anti-GAPDH antibodies (Abcam) at 4°C overnight. After washing, the PVDF membrane was incubated with a secondary HRP-conjugated antibody for 1 h at 25°C. Immunoreactive bands were visualized with enhanced chemiluminescence detection reagents (Beyotime, Shanghai, China). The experiment was carried out at least three times.
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2

Western Blot Analysis of Signaling Pathways

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After treatment, cells were lysed with cold RIPA lysis buffer (Beyotime, China) according to the manufacturer's instructions. The protein concentrations were determined with a BCA Protein Assay kit (Beyotime, China). Proteins were separated by SDS–PAGE, transferred to nitrocellulose filter membranes (Millipore, United States), blocked in 5% BSA in TBST for 2 h, and incubated overnight with primary antibodies at 4°C. The primary antibodies and dilutions were as follows: anti-GAPDH (1 : 2000; Cell Signaling Technology, #5147, United States), anti-IL-1β (1 : 1000; Abcam, #ab234437, United States), anti-NLRP3 (1 : 1000; Abcam, #ab263899, United States), anti-sFRP1 (1 : 1000; Abcam, #ab4139, United States), anti-JNK (1 : 1000; Cell Signaling Technology, #9252, United States), and anti-phospho-JNK (1 : 1000; Cell Signaling Technology, #4668, United States). Next, nitrocellulose filter membranes were exposed to horseradish peroxidase- (HRP-) conjugated secondary antibodies (Cell Signaling Technology, United States). Luminata™ Forte Western HRP Substrate (Millipore, United States) was used to detect the signals.
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3

Western Blot Analysis of Wnt Pathway Proteins

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Western blot analysis was performed according to a previously described standard method51 (link) using anti-AXIN2 (1:500; Abcam, Cambridge, MA), anti-DKK3 (1:500; GeneTex, San Antonio, TX), anti-SFRP1 (1:500; Abcam) or anti-β-catenin (1:1,000; Cell Signaling, Danvers, MA) antibodies. Blotted membranes were stripped and re-blotted with anti-GAPDH rabbit monoclonal antibody (1:2000; Sigma, St. Louis, MO) as a loading control. Original data of immunoblotting are presented in Supplementary Fig. 8.
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4

Western Blot Analysis of EMT Markers

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Western blotting analysis was performed according to a standard method previously described, using anti-RPRD1A, anti-Axin2, anti-Dkk3, anti-SFRP1 (Abcam) or anti-E-cadherin, anti-α-catenin, anti-N-cadherin, anti-vimentin and anti-β-catenin (Cell Signaling) antibodies. The blotting membranes were stripped and re-probed with an anti-α-tubulin antibody (Sigma, Saint Louis, MO) as the loading control.
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5

Western Blot and Nuclear Extraction Analysis

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For western blots, total cellular protein was extracted from cells and separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis. Nuclear extracts were prepared using the Nuclear Extraction Kit (ActiveMotif), according to the manufacturer's instructions. The following antibodies were used: anti-β-catenin (Millipore, Billerica, MA), anti-LZTFL1 (Sigma, St. Louis, MO), anti-SFRP1 (Abcam), anti-DKK2 (GeneTex, San Antonio, TX), anti-HDAC1 (Santa Cruz Biotechnology, Santa Cruz, CA), anti-GAPDH rabbit monoclonal antibody (Sigma, St. Louis, MO).
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6

Immunohistochemical Analysis of NSCLC Tissue

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Immunohistochemistry assays were performed on the paraffin-embedded NSCLC tissue57 (link), using the following primary antibodies: anti-AXIN2 (1:100; Abcam), anti-DKK3 (1:100; GeneTex), anti-SFRP1 (1:100; Abcam) and anti-β-catenin (1:200; Cell Signaling). The degree of immunostaining of indicated proteins was evaluated and scored by two independent observers, who scored both the proportions of tumour cells that stained positively and the intensity of the staining. The proportion of positively stained tumour cells was graded as follows: 0 (no positive tumour cells); 1 (<10% positive tumour cells); 2 (10–50% positive tumour cells); and 3 (>50% positive tumour cells). The intensity of the staining was graded as follows: 0 (no staining); 1 (weak staining=light yellow); 2 (moderate staining=yellow brown); and 3 (strong staining=brown). The staining index (SI) was calculated as the product of the staining intensity × the percentage of positive tumour cells, resulting in scores of 0, 1, 2, 3, 4, 6 and 9. Cutoff values for high and low expression of the protein of interest were chosen based on a heterogeneity measurement using the log-rank test with respect to OS. An SI score ≥4 was considered high expression, and an SI score ≤3 was considered low expression.
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7

Investigating EZH2 and Wnt Signaling

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Dulbecco’s Modified Eagle’s Medium: Nutrient Mixture F-12 (DMEM/F-12) Media was obtained from Hyclone (Utah, USA). Recombinant human and mouse IL-1β were obtained from R&D Systems (Minneapolis, MN, USA). Penicillin, streptomycin and fetal bovine serum (FBS) were obtained from Gibco BRL (Grand Island, NY, USA). EPZ005687 was obtained from MedChemExpress _(1396772-26-1). The following antibodies were used in this study: anti-EZH2 from Abcam (Cell Signaling Technology); anti-SOX9 and anti-β-catenin from Cell Signaling Technology (Danvers, MA, USA); anti-H3K27me3 (Millipore, CA, US); normal rabbit IgG (Santa Cruz, Heidelberg, Germany); anti-SFRP-1 (Abcam, Cambridge, UK); Alexa-Fluor-488- and Alexa-Fluor-545- conjugated secondary antibodies from Molecular Probes (Eugene, OR, USA); and goat anti-rabbit IRDye 800CW and goat anti-mouse IRDye 680 secondary antibodies from LI-COR Biosciences (Lincoln, NE, USA).
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8

Evaluating the Impact of miR-454-3p on Mammary Tumor Progression

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BALB/c-nude mice (female, 4-5 weeks of age, weighing 18-20 g) were purchased from the Center of Experimental Animals of Guangzhou University of Chinese Medicine. All the experimental procedures were approved by the Institutional Animal Care and Use Committee of Guangzhou Medical University. The BALB/c nude mice were randomly divided into the indicated groups. The indicated cells were inoculated subcutaneously into the mammary fat pad of the mice. Tumor volume was calculated using the equation L × W2 / 2 (L = length, W = width). Thirty days after tumor implantation, the mice were sacrificed. The mammary tumors were then moved and weighed. For analysis of metastasis status, nude mice were intravenously injected with miR-454-3p-transduced or miR-454-3p-silenced cells or control cells via the lateral tail vein. The lungs were collected to count surface metastases under a dissecting microscope at 40 days after tumor implantation. The tumors and lungs were fixed in formalin and embedded in paraffin using the routine method. Serial 6.0-μm sections were cut and subjected to H&E staining with Mayer's hematoxylin solution. IHC assay was performed using anti-RPRD1A, anti-AXIN2, anti-DKK3, anti-SFRP1 (Abcam) and anti-β-catenin antibodies (Cell Signaling).
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9

Quantification of Wnt Pathway Proteins

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Western blot analysis was performed using anti-SFRP1 (1:2000, Abcam, Cambridge, MA, USA); anti-AXIN2 (1:1000, Abcam, Cambridge, MA, USA), anti-ICAT (1:1000, Abcam, Cambridge, MA, USA); anti-β-catenin (1:1000, Abcam, Cambridge, MA, USA). To control sample loading, the blotting membranes were stripped and re-probed with an anti–α-tubulin or anti-p84 antibody (1:1000, Sigma, Saint Louis, MO, USA). Nuclear extracts were prepared using the Nuclear Extraction Kit (Active Motif), according to the manufacturer's instructions. Briefly, cells were collected in the PBS/phosphatase inhibitors solution and lysed in the Lysis Buffer, and then centrifuged for 5 minutes. Suspending nuclear pellet in 50 ul Complete Lysis Buffer, then incubating for 30 minutes on ice. Vortex the mixture for 30 seconds followed by centrifuge for 10 minutes at 14,000 g at 4°C, the collected nuclear extraction were store at −80°C for further examination. The expression levels of SFRP1, AXIN2, ICAT and β-catenin were determined by densitometry. The ratio of first sample (SFRP1/α-tubulin, AXIN2/α-tubulin, ICAT/α-tubulin and β-catenin /α-tubulin) was considered as 1.0.
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10

Western Blot Analysis of Wnt Pathway Proteins

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Cells were lysed in RIPA buffer (25 μM Tris-HCl (pH 7.6), 150 μM NaCl, 1% NP-40, 1% sodium deoxycholate, 0.1% SDS) supplemented with 1% proteinase inhibitors (Cat. No: P2850, Sigma) for total protein preparation. Nuclear protein extracts were obtained with Nuclear Extraction Kit (Active Motif) according to the manufacturer's instructions. Briefly, 40 μg protein samples were analyzed by 10% SDS-PAGE and the gels were transferred onto a polyvinylidene fluoride membrane. The membranes were blocked with 5% non-fat dried milk in TBST (10 mM Tris-HCl, 150 mM NaCl and 0.1% Tween-20) for 1 h at room temperature, and incubated overnight at 4°C with specific primary antibodies. Membranes were washed three times with TBST buffer, then incubated for 1 h with 1:2000 secondary antibodies, and developed with enhanced chemiluminescence (ECL, Millipore, USA). The primary antibodies included anti-NKD1 (1:1000, Abcam, USA), anti-SFRP1 (1:1000, Abcam, USA), anti-GSK3β antibody (1:1000, Abcam, USA), anti-TLE3 antibody (1:1000, Abcam, USA) and anti-β-catenin (1:1000, Abcam, USA) antibody. Anti-GDPAH (1:5000, Beyotime, China) and anti-p84 (1:1000, Abcam, USA) antibodies were used as the loading control.
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