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5 protocols using e0431

1

Immunohistochemical Analysis of Hepatic α-SMA

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Five-µm-thick hepatic tissue sections were deparaffinized in xylene and rehydrated serially with alcohol and water, followed by microwave antigen retrieval for 20 min at 98 °C in 10 mM sodium citrate buffer (0.05% tween 20, pH 6.0). Endogenous peroxidase was blocked with fresh 0.3% hydrogen peroxide in phosphate buffered saline (PBS) for ten minutes at room temperature. Sections were blocked 2 h with protein block (DAKO, Belgium) in PBS containing 0.5% triton and were incubated overnight at 4 °C in the presence of a specific alpha-smooth muscle actin antibody (α-SMA, 1/200, ab5694, Abcam, UK). After being washed three times in PBS, sections were incubated with biotinylated secondary swine anti-rabbit antibody (E0431, DAKO, Belgium) for 1 h and with streptavidine-HRP (1/800, P0397, DAKO, Belgium) for 30 min. α-SMA was visualized using DAB (K3468, DAKO, Belgium) and sections were counterstained with hematoxylin. Sections were observed at 20X magnification Mirax Desk and Mirax viewer, Carl Zeiss MicroImaging, Germany).
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2

Immunofluorescence Analysis of IL-15+ Cells in Bone Marrow

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Immunofluorescence analysis of BM sections was performed, as described by Herndler-Brandstetter et al. (8 (link)). Formalin-fixed, paraffin-embedded 4-µm BM sections were deparaffinized in xylene and re-hydratated in ethanol. The slides were boiled in 0.01 M citrate buffer (pH 6) for 16 min in the microwave for epitope retrieval and allowed to cool for about 1 h at room temperature. Slides were blocked with 3% skim milk in TBS/Tween for 20 min at room temperature. Rabbit anti-IL-15 (1:200; ab55276; Abcam) and mouse anti-CD8 (1:50; C8/144B; Dako) Abs were incubated overnight at 4°C. After washing, the slides were incubated for 1 h at 4°C with biotinylated swine anti-rabbit Ab (1:300; E0431; Dako) and a goat anti-mouse Alexa Fluor 546 Ab (1:300; A11018; Molecular Probes). Following washing steps with TBS/0.1% Tween, the BM sections were stained with a streptavidine-Alexa Fluor 488 Ab (1:500; S11223; Molecular Probes) for 30 min at 4°C. The stained slides were analyzed using confocal microscopy with an m-Radiance confocal scanning system (Bio-Rad) attached to a Zeiss Axiophot microscope (Carl Zeiss). For the quantitative analysis of CD8+ T cells in close contact with IL-15–producing cells in the BM, pictures from different areas of the BM sections were analyzed. In total, 800–1,000 CD8+ T cells were analyzed from each donor to calculate the percentage of contact with IL-15+ cells.
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3

Immunohistochemical Detection of Amyloid-β

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The fixed brains were embedded in paraffin, and subsequently cut in sections of 5 µm. After deparaffinization with xylene and rehydration through graded ethanol series, the slides were cooked for 20 min in citrate buffer for antigen retrieval. Slides were then stained overnight at 4°C with anti-amyloid-β antibody (1:1000; Abcam ab2539) followed by a 1 hr room temperature incubation with biotinylated secondary antibody (1:300; Dako E0431). Immunodetection was visualized using an Avidin-Biotin Complex kit (Vector Laboratories, UK), and sections were counterstained with haematoxylin before mounting. The slides were digitized with an automatic bright field microscope (Philips Ultra Fast Scanner, Philips, the Netherlands) and assessed by one examiner (LPM) for positivity for amyloid-β.
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4

Detecting GFP Antigen in Cells

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The cell culture and frozen tissue sections were analysed immunohistochemically and with immunofluorescence to detect the GFP antigen. Incubations with the primary polyclonal antibody rabbit-Anti-CopGFP (Evrogen AB 513; Evrogen, Moscow, Russia) diluted at 1:1000 were carried out overnight at 4 °C. After incubation with the primary antibody, one set of sections was incubated with a biotylinated swine-anti-rabbit secondary antibody (E0431; Dako, Hamburg, Germany) at a dilution of 1:400 for 60 min at room temperature. Thereafter, the peroxidase streptavidin-biotin-complex (ABC) detection system (Vectastain Elite ABC Kit; Vector Laboratories Inc., Burlingame, CA, USA) was applied and slices were exposed to diaminobenzidine tetrachloride (DAB) substrate (Sigma-Aldrich, St. Louis, MO, USA) in accordance with the instructions of the manufacturer. A second set of sections was incubated with a secondary goat-anti-rabbit antibody Alexa 546 (Molecular Probes) at a dilution of 1:1000. Finally, the sections were counterstained with 4′,6-diamidino-2-phenylindole (DAPI) (D9542; Sigma-Aldrich) diluted at 1:2000. Cop-GFP transfected control cells functioned as positive controls. In the negative control sections, the primary antibody was omitted. During microscopy of all slices, the number of cells with a positive signal was estimated subjectively (low/moderate/high numbers).
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5

Immunohistochemical Staining of MET Protein

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Cells were cultured on Nunc™ Lab-Tek™ Chamber slides (Thermo Scientific) until 60-90% confluence was reached. Subsequently, the cells were washed with cold PBS and immersed in fresh, cold Paraformaldehyde (4% v/w) for 20 min. for fixation. After blocking endogenous peroxidase activity with a 0.3% H2O2 solution for 5 minutes, slides were stained with the ABC procedure [57 ]. Endogenous biotin was blocked using the Avidin/Biotin blocking kit (SP-2001; Vector Laboratories Ltd; Peterborough, United Kingdom). Cells were incubated O/N at 4°C with the primary MET antibodies (Supplementary Table S7) and incubated for 30 minutes at room temperature with the secondary biotinylated polyclonal swine anti-rabbit antibody (1:150; E0431; Dako; Heverlee, Belgium). Signal amplification was performed with the VECTASTAIN® Elite ABC system (PK-6100; Vector Laboratories Ltd) according to the manufacturer's protocol. Finally, horseradish peroxidase activity was visualized in 90 seconds with 3, 3′-diaminobenzidine (K3468; Dako) prepared in accordance with the manufacturer's instructions.
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