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11 protocols using edta vacuette tube

1

Tissue and Plasma Collection for Imaging

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Tissue and plasma samples were obtained at the time of sacrifice on the final day of optical imaging. Mice were euthanized and the biceps femoris region of the left hind legs, i.e., internal control skeletal muscle samples without the To3B myoblast grafts, were immediately cut away from the bone, snap frozen in liquid N2, and stored at -80° C. Whole blood was collected by heart puncture into ice chilled EDTA-Vacuette tubes (Greiner Bio-One) and centrifuged at 2500×g for 10 min at 4° C. The plasma was decanted into fresh chilled cryotubes, and stored at -80° C. In addition, the biceps femoris muscle region with To3B grafts was cut away from the bone and placed in sterile PBS on ice until microscopic imaging that occurred within 15 min of dissection.
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2

Cryopreservation of PBMC for Mass Cytometry

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PBMC were isolated from blood and collected in EDTA vacuette tubes (Greiner Bio‐One International, Kremsmünster, Austria) using a Ficoll‐Paque Plus (GE Healthcare, Chicago, IL, USA) density separation gradient. Samples were cryopreserved in 5–10% DMSO/FBS for storage in liquid nitrogen prior to mass cytometry staining.
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3

Isolation and Cryopreservation of PBMCs from Blood

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PBMCs were isolated from blood within 0–8 h of collection in EDTA vacuette tubes (Greiner Bio‐One International, Kremsmünster, Austria) using a Ficoll‐Paque PLUS (GE Healthcare, Chicago, IL) density separation gradient. When blood was not processed immediately, samples were stored at room temperature to minimize cell loss.40 Although leaving cells at room temperature can alter receptor expression (particularly chemokine receptors),40 variance of receptor expression between patients was comparable to internal controls, suggesting that experiment/instrument variability played a larger role than blood processing time (Supplementary figure 5). Cells were counted and blood volume was recorded, such that the concentration of cells in blood could be calculated. Samples were cryopreserved in 5% dimethyl sulfoxide/fetal bovine serum for storage in liquid nitrogen prior to mass cytometry staining.
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4

Mass Cytometry Analysis of PBMC

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Up to 50 mL of venous blood were collected in EDTA vacuette tubes (Greiner Bio-One International, Kremsmünster, Austria) from patients and controls. Blood was taken from MS patients prior to and 2, and 6 months after their first dose of CladT. Concurrently, the same numbers of blood tubes were also taken from age- and sex-matched non-MS control subjects at baseline, and then 2, and 6 months later. PBMC were then isolated from the blood using a Ficoll-Paque Plus (GE Healthcare, Chicago, Illinois, US) density separation gradient. Samples were cryopreserved in 5% DMSO/FBS for storage in liquid nitrogen prior to mass cytometry staining. Thawed cryopreserved Ficoll-isolated PBMCs were labelled with isotope-conjugated antibodies and examined by mass cytometry using the CyTOF2 system, Helios.
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5

Isolating PBMCs for mass cytometry

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Peripheral blood mononuclear cells were isolated from blood and collected in EDTA vacuette tubes (Greiner Bio‐One International, Kremsmünster, Austria) using a Ficoll‐Paque Plus (GE Healthcare, Chicago, Illinois, US) density separation gradient. Samples were cryopreserved in 5% dimethyl sulfoxide/foetal bovine serum for storage in liquid nitrogen prior to mass cytometry staining.
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6

Quantifying Plasma Gut Hormone Levels

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Venous blood samples were collected into EDTA vacuette tubes (Greiner Bio-One, Kremsmünster, Austria). After centrifugation (4C, 3000 rpm for 15 min) the plasma was collected and frozen at -80C until analysis. ELISA kits were used to measure fasting concentrations of plasma leptin, PYY, total ghrelin, total GLP-1 (all Merck Millipore, UK Ltd) and GDF-15 (R&D Systems, UK). All assays were performed according to the manufacturers' instructions and quality controls were within pre-specified limits. Coefficients of variation (CV) were ≤8% for all measures: leptin (4.2%), GDF-15 (2.9%), PYY (6.5%), total ghrelin (2.3%), and total GLP-1 (8.0%).
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7

Isolation of Canine PBMCs by Density Gradient

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Approximately 2 mL of whole blood was collected from each control or atopic dog by jugular or antebrachial cephalic venepuncture and transferred into EDTA Vacuette tubes (Greiner Bio-One, Kremsm€ unster, Austria). Blood samples were stored at room temperature (RT) and processed within 24 h after collection.
PBMC were isolated from whole blood using a standard density gradient centrifugation by Histopaque-1077 g/mL (Sigma-Aldrich, St. Louis, MO, USA) as described elsewhere. 10, 13 Anticoagulated blood was layered onto Histopaque-1077, followed by centrifugation (700g) for 25 min at RT. The layer of PBMC was collected from the interface, washed and re-suspended in HBSS (Hank's balanced salt solution, Gibco, Life Technologies; Carlsbad, CA, USA) supplemented with 3% inactivated fetal calf serum (FCS) to establish cell count and viability. The cell viability was determined by flow cytometry with Guava ViaCount Flex (Merck Millipore; Billerica, MA, USA) and ranged from 95 to 99%.
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8

Plasma Sample Processing and Biomarker Analysis

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Venous blood samples were collected into EDTA vacuette tubes (Greiner Bio-One, Kremsmünster, Austria). After centrifugation (4°C, 3,000 rpm for 15 min) the plasma was collected and frozen at -80°C until further analysis. The blood samples used for the determination of GLP-1 and PYY were pipetted into eppendorf tubes containing Aprotinin (400 kIU activity per ml, SigmaeAldrich, UK) and centrifuged at 14,000 rpm for 4 min.
Subsequently 300 μL of plasma was aliquoted into eppendorf tubes for the storage at -80°C.
Hexokinase method (Randox Laboratories Ltd., Crumlin, UK) was used to measure glucose concentrations. ELISA kits were used to measure concentrations of plasma insulin (Mercodia AB, Uppsala, Sweden), active GLP-1 (Merck EMD Millipore, Millipore, Billerica, MO, USA) and total PYY (Merck EMD Millipore, Millipore, Billerica, MO, USA). CVs were <3% for the glucose, <4% for the insulin and, <8% for the GLP-1 and PYY assays.
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9

Quantifying Malaria Gametocytes and Asexual Stages

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Individuals were recruited to the trial on the basis of blood smear examination and gametocyte quantification, but ring stages and gametocytes were subsequently quantified by highly sensitive qRT-PCR, as described [14 (link)]. Briefly, EDTA blood (EDTA VACUETTE tube, Greiner Bio-One, Kremsmünster, Austria) was aliquoted into RNA protect cell reagent (Qiagen, Hilden, Germany) and stored at − 80 °C until temperature tracked shipment on dry ice to Radboud University Medical Center (Nijmegen, Netherlands) for assay performance. Total nucleic acids were extracted using a MagNAPure LC automated extractor (Total Nucleic Acid Isolation Kit-High Performance; Roche Applied Science, Indianapolis, IN, USA). Male and female gametocytes were quantified in a multiplex reverse transcriptase quantitative PCR (RT-qPCR) assay as described [14 (link)]. Asexual stages were quantified by quantification of SBP1 transcripts, as described elsewhere [19 (link)]. Samples were classified as negative for a particular gametocyte sex if the qRT-PCR quantified density of gametocytes of that sex was less than 0·01 gametocytes per μL (i.e. one gametocyte per 100 μL of blood sample).
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10

Plasma Metabolite Extraction and Analysis

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All participants were informed to avoid strenuous exercise and alcohol consumption within 24 h before blood collection. Peripheral blood samples were drawn from cubital vein in fasting state in the morning before 9 a.m. We collected blood samples in EDTA VACUETTE tube (Greiner Bio-one, Thailand) and gently shook the tubes 4–5 times to mix up blood sample with anticoagulant. Then the tubes were centrifuged at 4,000 r/min for 10 min at 4°C. Plasma was immediately separated and stored at −80°C refrigerator. Samples were thawed on ice before preparation. Four hundred micro liter of cold methanol (containing internal standard) was added to 100 μL of plasma sample and vortexed for 60 s. After 10 min at room temperature, they were centrifuged at 14,000 g for 15 min to precipitate the protein. And the supernatant was then transferred and collected for the analysis in positive electrospray ionization (ESI+) mode and negative electrospray ionization (ESI-) mode, respectively. To evaluate the stability of the analysis, quality control (QC) samples were prepared by mixing equal volumes of each plasma sample and evenly injected at regular intervals throughout the analytical run.
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