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4 protocols using rabbit anti myd88

1

Immunoblot Analysis of Inflammatory Signaling

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Immunoblot analysis was performed as described earlier [13 (link)], using the following antibodies: rabbit anti-TREM-1 (Abcam, USA), rabbit anti-MyD88 (Cell Signaling, USA), rabbit anti-TRIF (Thermo Fisher Scientific, USA), mouse anti-Syk (Abcam, USA), rabbit anti-p-Syk (Thermo Fisher Scientific, USA), rabbit anti-DAP12 (Cell Signaling, USA), rabbit anti-AKT (Cell Signaling, USA), rabbit anti-p-AKT (Cell Signaling, USA), mouse anti-TLR4 (Santa Cruz, USA), rabbit anti-TLR2 (EMD Millipore, USA), rabbit anti-p38 (Cell Signaling, USA), rabbit anti-p-p38 (Cell Signaling, USA), rabbit anti-ERK (Cell Signaling, USA), rabbit anti-p-ERK (Cell Signaling, USA), rabbit anti-IκB (Cell Signaling, USA), rabbit-anti-p-IκB (Cell Signaling, USA), mouse anti-C/EBP (Santa Cruz, USA), mouse anti-β-actin (Santa Cruz, USA), and rabbit anti-4G10 (Sigma-Aldrich, USA). Either horseradish peroxidase-conjugated goat anti-rabbit antibody or goat anti-mouse antibody (Cell Signaling, USA) was used as a secondary antibody. R406 was purchased from Selleckchem.
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2

Immunoprecipitation of IL1R1 Signaling

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EVs were separated from the cells, lysed in IP buffer (cat#87788; Thermo Fisher) with Protease and Phosphatase Inhibitor (Cat#1861281; Thermo Fisher), and agitated for 1 h at 4 °C shaking. The IP buffer consists of 1% NP40, 125 mM NaCl and 25 mM Tris/HCL pH 7.4. Supernatants were transferred to a new reaction tube and a Bradford assay performed. The samples were stored at –80 °C until use. Lysed samples were preincubated with beads for 30 min at 4 °C and centrifuged to collected supernatants. Mouse anti-IL1R1 antibody (Cat# sc-393998; Santa Cruz) was then added to the protein sample. The antibody-protein complex was incubated overnight at 4 °C with agitation. Prewashed beads were added to the sample and incubated for 3 h by shaking at 4 °C. Afterwards, the magnetic beads were separated from the supernatants and transferred to a new tube where they were washed trice. Finally, samples were resuspended in 2 × reducing Laemmli SDS sample buffer. Unbound samples served as a control. After an incubation for 10 min at 70 °C the beads were removed and the supernatants of the elutions were stored at -20 °C. Rabbit anti-pIRAK4 (Cat#11927; Cell signaling Technology®) and rabbit anti-MyD88 (Cat#4283; Cell signaling Technology®) antibodies were used for WB detection.
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3

CRISPR-Mediated Myd88 Knockout in 3T3 Cells

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A Myd88-targeting guide RNA (5’-TCGCGCTTAACGTGGGAGTG-3’) was cloned into the pX330 plasmid backbone (Addgene Plasmid #42230) and transfected using electroporation (Lonza) into 3T3s. 48 hours post-transfection, single cells were sorted into a 96-well plate and allowed to grow into clonal populations. Screening by Sanger sequencing identified three clones with frameshift mutations in one or both copies of the gene. Successful knockout was confirmed with western blot probing for MyD88 (1° rabbit anti-MyD88 1:1000, Cell Signaling Technologies. 2° goat anti-rabbit DyLight 800 1:25000), following which the blot was stripped and reprobed for β-actin as a loading control (mouse anti-β-Actin DyLight 680, 1:1000). Blots were imaged on a LICOR scanner on the 700 and 800 nm channels.
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4

Antibody Validation for Protein Expression

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Antibodies against FLAG and MYC (dilution 1:3,000) were purchased from Abmart. Monoclonal antibody against USP7 was obtained from Santa Cruz Biotechnology (1:1,000). Rabbit anti-MyD88 was sourced from Cell Signaling Technology (1:2000). Mouse anti-β-actin was obtained from Proteintech (1:3000). Goat anti-mouse and goat anti-rabbit secondary HRP-conjugated antibodies were purchased from Abcam. LPS (Escherichia coli serotype O55:B4) was purchased from Sigma-Aldrich.
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