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3 protocols using irdye goat anti rabbit igg

1

Detecting USP10 Ubiquitination in Leukemia Cells

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MOLM14 cells were treated for three hours with P22077 and Ba/F3-FLT3-ITD cells were treated for 7 hours with HBX-19818. Cells were harvested, washed with PBS, and lysed in 1% NP-40, 10% glycerol, 2% sodium orthovanadate, and HALT protease inhibitor cocktail (ThermoFisher). Lysate was diluted to 50 ug in 30 uL lysis buffer with 1 mM DTT and incubated on ice for 15 minutes. 0.25 ug HA-Ub-VS was added, and the sample was gently rocked at room temperature for 30 minutes, then denatured with LDS sample buffer. 12 ug lysate was separated by SDS-PAGE, transferred to a nitrocellulose membrane, blocked in milk, and treated with a USP10 antibody ((D7A5) (rabbit, #8501) (Cell Signaling, Danvers, MA). After washing, the membrane was treated with a 780-nm IRdye goat anti-rabbit IgG (Licor) and imaged using an Odyssey scanner (Licor).
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2

Western Blot Analysis of Npt2b in AECII

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Isolated AECII were lysed in radioimmunoprecipitation assay buffer (Santa Cruz Biotechnology) with protease inhibitor cocktail (P8340, Sigma) on ice for 30 min, solubilized in reducing buffer, loaded into SDS-PAGE wells at equal protein concentrations, transferred to PVDF membrane (Immobilon-P, Millipore), and immunoblotted with anti-Npt2b antibody (1:1000 dilution). LI-COR IRDye goat anti-rabbit IgG was used as the secondary antibody. Protein species were visualized using the Odyssey Infrared Imaging System (LI-COR).
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3

Quantifying Membrane-Bound RANKL in Chondrocytes

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Expression of membrane-bound RANKL was detected by western blot analysis. Chondrocytes were resuspended in Mammalian Protein Extraction Buffer (GE Healthcare, Piscataway, NJ, USA) containing protease inhibitors (diluted 1:100, Takara Bio USA, CA, USA) 60 hours after cytokine stimulation. Protein concentrations were determined by the Bradford method. Similar amounts of protein extracts were loaded onto sodium dodecyl sulfate–polyacrylamide gels (Any kDTM Mini-PROTEAN® TGXTM Gels (Bio-Rad, Munchen, Germany)) and run for 45 minutes at 150 V before transfer to polyvinylidene difluoride membranes using a Trans-Blot® TurboTM Blotting System (Bio-Rad). The membranes were incubated with blocking reagent (Toyobo) and incubated overnight at 4°C with RANKL antibodies (dilution, 1:500; cat. no. ab9957; Abcam). After washing with washing buffer, the membranes were incubated with IRDye Goat anti-Rabbit IgG (LI-COR Biosciences, Lincoln, NE, USA) secondary antibodies at room temperature for 1 hour. Immunoreactive proteins were detected using the OdysseyFc Imaging System (LI-COR Biosciences). We analyzed the densities of the resulting protein bands using the OdysseyFc Imaging System. The levels of membrane-bound RANKL were expressed as ratios and normalized to β-actin.
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