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5 protocols using anti ifn γ antibody clone 1 d1k

1

PBMC Peptide Stimulation and IFN-γ ELISPOT

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PBMCs were pulsed either with 1 µg/ml or with 5 µg/ml of HLA class I or HLA class II peptide, respectively. Irrelevant peptides with the respective HLA restrictions were used as negative control (YLLPAIVHI for HLA-A*02 (source protein: DDX5_HUMAN), and ETVITVDTKAAGKGK for HLA class II (source protein: FLNA_HUMAN)). Cells were cultured for 12 days adding 20 U/ml IL-2 (Novartis, Basel, Switzerland) on days 2, 5, and 7. Peptide-stimulated PBMCs were analyzed by IFN-γ enzyme-linked immunospot (ELISPOT) assay on day 1267 (link), with anti-IFN-γ antibody (clone 1-D1K, 2 µg/mL, MabTech), anti-IFN-γ biotinylated detection antibody (clone 7 B6 1, 0.3 µg/mL, MabTech), ExtrAvidin-Alkaline Phosphatase (1:1000 dilution, Sigma-Aldrich) and BCIP/NBT (5 bromo 4-chloro 3 indolyl-phosphate/nitro-blue tetrazolium chloride, Sigma-Aldrich). Spots were counted using an ImmunoSpot S6 analyzer (CTL, Cleveland, OH, USA) and T cell responses were considered positive if >10 spots/500,000 cells were counted, and the mean spot count was at least three-fold higher than the mean spot count of the negative control.
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2

Ex Vivo Antigen-Specific CD8+ T Cell Profiling

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Blood samples were collected before and every 3 cycles on treatments. PBMC were isolated and frozen for batched subsequent analysis. Direct ex vivo interferon (IFN)-γ Elispot analysis was performed using cryopreserved PBMC to assess for induction of antigen-specific CD8+ T cell responses. Briefly, one vial of frozen PBMCs from each time point was thawed and plated into anti-IFN-γ antibody (clone 1-D1K, Mabtech, Inc) pre-coated Elispot plate at 500,000 per well. Cells were then stimulated with either EBV control peptide (Invitrogen, Inc.) or one of the melanoma peptides, gp-100, Mage-3, Melan A, and NA-17 (Multiple Peptide Systems), at 50 μM for 24 h at 37 °C. Medium alone was used as negative control and P + I (PMA + Ionomycin) was used as positive control. For P + I control wells, 5000 PBMC were plated per well. After 24 h, plates were washed and incubated with a biotinylated anti-IFN-γ secondary Ab (clone 7-B6-1, Mabtech, Inc) for 2 h at room temperature, washed again and incubated with streptavidin-conjugated AP for 1 h, washed, and incubated with AP substrate. Excess substrate was removed by rinsing with tap water. Plates were then captured and counted using a CTL-ImmunoSpot S6 Core Analyzer from Cellular Technology Ltd (Cleveland, OH). All samples were analyzed in triplicate, and the mean response to the negative control was subtracted from each sample.
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3

IFNγ ELISPOT and ELISA Assays

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IFNγ ELISPOT was performed as previously described (5 (link), 6 (link)). Briefly, 15,000 TCR-transduced or mock-transduced (TEG-LM1) T cells and 50,000 target cells (ratio 0.3:1) were cocultured for 24 h in nitrocellulose-bottomed 96-well plates (Merck, Schiphol-Rijk, the Netherlands), pre-coated with anti-IFNγ antibody (clone 1-D1K) (Mabtech, Nacka Strand, Sweden). Plates were washed and incubated with a second biotinylated anti-IFNγ antibody (clone 7-B6-1) (Mabtech) followed by streptavidin-HRP (Mabtech). IFNγ spots were visualized with tetramethylbenzidine substrate (Sanquin) and the number of spots was quantified using ELISPOT Analysis Software (Aelvis, Hannover, Germany). IFNγ ELISA was performed using ELISA-ready-go! Kit (eBioscience) following manufacturer’s instructions. Effector and target cells (E:T 15,000:15,000) were incubated for 24 h in the presence of pamidronate when indicated.
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4

PBMC Stimulation and IFN-γ ELISpot Assay

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PBMCs from AML patients after DNMTi therapy were pulsed with 5 µg/ml per HLA class II peptide and the HLA class II negative control peptide ETVITVDTKAAGKGK (source protein: FLNA_HUMAN) was also used for stimulation. Cells were cultured for 12 days adding 20 U/ml IL-2 (Novartis, Basel, Switzerland) on days 2, 5, and 7. Peptide-stimulated PBMCs were analyzed by IFN-γ ELISpot assay on day 12 with anti-IFN-γ antibody (clone 1-D1K, 2 µg/mL, MabTech), anti-IFN-γ biotinylated detection antibody (clone 7 B6 1, 0.3 µg/mL, MabTech), ExtrAvidin-Alkaline Phosphatase (1:1000 dilution, Sigma-Aldrich) and BCIP/NBT (5 bromo 4-chloro 3 indolyl-phosphate/nitro-blue tetrazolium chloride, Sigma-Aldrich)78 (link). Spots were counted using an ImmunoSpot S6 analyzer (CTL, Cleveland, OH, USA) and T cell responses were considered positive when >10 spots/500 000 cells were counted, and the mean spot count was at least three-fold higher than the mean spot count of the negative control.
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5

IFN-γ ELISPOT Assay for HIV and CMV

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IFN-γ enzyme-linked immune absorbent spot (ELISPOT) assays against HIV-gene product peptide pools and a CMV-pp65 peptide pool were performed as previously described [18 (link)]. In brief, Multiscreen IP 96-well plates (Millipore) were coated with 0.5 μg/mL of anti-IFN-γ antibody (clone 1-D1K, Mabtech, Sweden) in phosphate-buffered saline and incubated overnight. Plates were washed, PBMCs were added at 2 × 105 cells per well, and HIV peptide pools or CMV-pp65 peptide pool (10 μg/mL/peptide) and phytohemagglutinin (2 μg/mL) were added. Plates were incubated overnight, washed and secondary antibody was added (clone 7-B6–1, Mabtech) and incubated for 1 hour. Plates were developed with Streptavidin-ALP (Mabtech) and Color Development Buffer (Bio-Rad, Hercules, CA). ELISPOT responses were background subtracted prior to data analysis.
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