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Wga 647

Manufactured by Thermo Fisher Scientific

The WGA-647 is a fluorescent dye used for labeling and detection of proteins in various biological applications. It binds to N-acetylglucosamine residues, providing a specific method for visualizing glycoproteins. The dye exhibits excitation and emission maxima at 650 nm and 668 nm, respectively, making it compatible with standard red fluorescence detection systems.

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7 protocols using wga 647

1

Visualizing C4-2 Cell Surfaces

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Formalin-fixed C4-2 cells were stained with wheat germ agglutinin (WGA) conjugated to Alexa Fluor 647 (WGA-647, Life Technologies) and 4′,6-diamidino-2-phenylindole (DAPI, Vector Laboratories, Burlington, ON) and imaged by confocal microscopy.
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2

Antibiotic Treatment and Cell Imaging

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Exponential-phase cell cultures (OD600, ∼0.1) were treated with antibiotics (CZ and/or ETP) and grown at 37°C in a roller. Samples were collected for imaging after 3 h. Eight microliters of cells was added to 2 μl of dye mix consisting of 2.5 μM Sytox Green (Life Technologies, Eugene, OR), 10 μg ml−1 DAPI (4′,6-diamidino-2-phenylindole) (Life Technologies, Eugene, OR), and 20 μg ml−1 WGA-647 (Life Technologies, Eugene, OR) in 1× Tris base and transferred to an agarose pad (10% MHB, 1% agarose). The exposure time of each wavelength was maintained constant for all images. Microscopy was performed as previously described (20 (link), 21 (link)). Quantification of the mean DAPI and Sytox Green intensities was performed using CellProfiler (22 (link)) as previously described (21 (link)).
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3

Antibody Generation and Utilization

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Affinity-purified rabbit antibodies against myosin VI, TAX1BP1 and optineurin were generated as previously described (Buss et al., 1998 (link); Morriswood et al., 2007 (link); Sahlender et al., 2005 (link)). Commercial antibodies against the following proteins were used: Cx43 [C6219; 1:200 immunofluorescence (IF), 1:2000 western blotting (WB)] and actin (A2066; 1:5000 WB) polyclonal antibodies (Sigma), Cx43 (05-763; 1:200 IF) monoclonal antibody (Millipore), GAPDH (6C5; 1:1000 WB) and clathrin (X22; 1:100 IF) monoclonal antibodies (Abcam), Dab2 (H-110; 1:100 IF) and GIPC1 (N-19; 1:100 IF) polyclonal antibodies (Santa Cruz Biotechnology) and pan-cadherin (4068; 1:1000 WB) polyclonal antibody (Cell Signaling). Phalloidin–Alexa-Fluor-647, Calcein AM, WGA–647 and Hoechst 33342 were purchased from ThermoFisher. Bafilomycin A1, brefeldin A and biotin were purchased from Sigma-Aldrich. JF646-HaloTag ligand was a kind gift from Joel Slaughter and Luke Lavis (Janelia Farm, HHMI, Ashburn, VA) (Grimm et al., 2015 (link)).
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4

Intracellular Zinc Cation Analysis

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An evaluation of the free zinc cations,
due to intracellularly dissolved NPs after their internalization and
in the absence of any mechanical treatment, was initially performed.
The cells were plated in chamber slides, treated with Fe:ZnO NPs,
and fixed (see the details above). The intracellular free zinc cations
were labeled through the FluoZin-3 AM (Thermo Fisher) probe: the cells
were washed twice with PBS and a 1 μM solution of FluoZin-3
AM fluorescent dye in PBS was administered. After 30 min of incubation
at 37 °C, the excess of dye was removed by two washing steps
with PBS. Then, cell lysosomes were labeled by substituting the PBS
with a 1 μM dye solution (LysoTracker Red DND-99, Thermo Fisher)
in PBS and incubating the cells for 30 min at room temperature. After
two further washing steps, the cell membranes and cell nuclei were
stained with WGA-647 (Thermo Fisher) and Hoechst, respectively, following
the same procedure reported above. The images were collected with
a spinning disk confocal microscope, keeping the exposure times and
laser powers constant among the different samples. They were then
post-processed in the same way to allow a direct comparison between
the samples in terms of free zinc intensity fluorescence too.
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5

Retrograde Tracer Injection in Mice

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Animals were anesthetized with ketamine/xylazine (100 mg/kg ketamine + 10 mg/kg xylazine, IP injection). Ophthalmic ointment was applied to the eyes and subcutaneous injections of meloxicam (5 mg/kg) and sustained-released buprenorphine (1.5 mg/kg) were given to each mouse prior to surgery. The abdominal skin was shaved and scrubbed (betadine and alcohol three times). A midline abdominal incision (2 cm) was made along the linea alba running approximately 1 cm caudal from the xiphisternum. Blunt glass probe was used to position the internal organ. A sharp glass needle was used to inject retrograde tracer (Thermo Fisher, WGA555 or WGA647, 5 mg/ml), which was controlled by air pressure applied from a 5 ml syringe. For gastric or intestinal injections, 3 uL tracer was injected at multiple sites into the layer between muscularis externa and serosa layer. For the portal vein injection, 0.5–1 uL tracer was injected to the connective tissue wrapping the portal vein. After injection, the skin incision was closed using 5–0 nylon sutures. 2–14 days following surgery, animals were euthanized and labeled tissue was harvested for histology or sequencing experiments.
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6

Visualizing Cell Surface Glycans with WGA-647

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The samples were stained for 10 minutes with 10 μg/ml wheat germ agglutinin conjugated with Alexa Fluor 647 (WGA-647) (ThermoFisher, Waltham, MA). Samples were then washed with PBS and imaged. Images were acquired at 0.39 μm z-steps on a Zeiss LSM 710 scanning head confocal microscope equipped with an Airyscan detector (Carl Zeiss MicroImaging GmbH, Jena, Germany) with a Zeiss a Plan-Apochromat 100x/1.46 DIC M27 75 mm objective. Excitation lasers were 405 and 633 nm for the green and red emission channels, respectively. GFP was detected with a 495–550 nm filter and WGA-647 was detected with a 645 nm LP filter. Laser dwell times were 1.65 μs for both channels. Image analysis (2D and 3D) was conducted using Volocity (PerkinElmer, Waltham, MA).
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7

Fluorescence Microscopy Analysis of EVs

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For the fluorescence microscopy analysis, EVs were labelled with Wheat Germ Agglutinin (WGA) conjugated with Alexa Fluor 647 (WGA647, λEx = 650 nm, Thermo Fisher), ZnO NCs with Atto 550-NHS ester (λEx = 554 nm, ATTO-Tech), and the TNHCD20 nanoconstruct was assembled using the AMCA AffiniPure F(ab′)2 Fragment Goat Anti-Human IgG, Fcγ fragment specific as secondary antibody.
Samples were treated with the same protocol used for the cytofluorimetric analysis and plated in a volume of 100 μL. After 24 and 48 h of culturing at 37 °C, 5% CO2 in 96 well plates, the content of each well was collected, centrifuged, resuspended in 40 μL of the correspondent medium. The 40 μL drop was spotted in a 8-well chamber slide (Thermo Scientific™ Nunc™ Lab-Tek™ II CC2™ Chamber Slide System) and placed at 37 °C, 5% CO2 for 30 min to allow the attachment of the cells. After that, cells were fixed using 250 μL of Image-iT™ Fixative Solution (4% formaldehyde, methanol-free, Thermo Scientific) for 10 min, washed in PBS and cells’ membranes were labelled by incubating cells with 1.25 μL of WGA conjugated with Alexa Fluor 488 (WGA488, λex = 495 nm, Thermo Fisher) for 10 min and washed two other times in PBS. Images were acquired using a wide-field fluorescence-inverted microscope using an immersion oil 100× objective.
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