The largest database of trusted experimental protocols

14 protocols using si ezh2

1

Modulation of MDS/AML cell fate by EZH2 and EHMT2 inhibition

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human MDS/AML cells (SKM-1 cells) were purchased from BeNa Culture Collection (Beijing, China) and cultured in Roswell Park Memorial Institute-1640 medium containing 10% fetal bovine serum in 95% humidified air with 5% CO2 at 37°C.
The small interfering RNA (siRNA)-NC-1, si-EZH1, si-NC-2, si-EZH2, si-NC-T2, and si-EHMT2 were designed and synthesized by GenePharma (Shanghai, China), and the sequence is shown in Supplementary Table 1. Overexpression vectors of EZH2 (pcDNA3.1-EZH2) and EHMT2 (pcDNA3.1-EHMT2) and empty vectors were constructed by Zoman Biotechnology Co., Ltd. (Beijing, China). Then, the constructed vectors and siRNAs were transfected into cells using Lipofectamine 2000 (Invitrogen Inc., Carlsbad, CA, United States).
SKM-1 cells were treated with EZH2 inhibitor EPZ-6438 (5 μM, Yeasen Biotech Co., Ltd., Shanghai, China) and EHMT2 inhibitor BIX-01294 (2.5 μM, Sigma-Aldrich, Merck KGaA, Darmstadt, Germany). Briefly, cells in logarithmic growth phase were seeded into 96-well plates (1 × 105 cells/mL) supplemented with culture medium, and treated with 5 μM EPZ-6438 for 4 days (Knutson et al., 2014 (link)) and 2.5 μM BIX-01294 for 3 days, respectively (Huang et al., 2017 (link)). The treated cells were allocated as EPZ group and BIX group, respectively.
+ Open protocol
+ Expand
2

Regulation of EZH2 by miR-381

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mimic control (miR-con), miR-381 mimic (miR-381) and miR-381 inhibitor (anti-miR-381) were purchased from Sangon Biotech (Shanghai, China). The empty pcDNA3.1 vector (Vector) or EZH2 overexpressing vector pcDNA3.1-EZH2 (EZH2) and small interfering RNA against EZH2 (si-EZH2) and its negative control (si-con) were designed and synthesized by Genepharma (China). Lipofectamine 2000 (Invitrogen) was used for cell transfections.
+ Open protocol
+ Expand
3

EZH2 Targeting in Glucose-Induced Min6 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Small interference RNA targeting EZH2 (si-EZH2) and its negative control (si-NC), miR-124 inhibitor and its negative control (inhibitor-NC), and miR-124 mimic and its negative control (mimic-NC) were purchased from Shanghai GenePharma. The cells were divided into a blank control (BC) group, high glucose culture (HG) medium group (Min6 cells were grown in medium with 25 mmol/L glucose), miR-124 inhibitor group (miR-124 inhibitor was transfected into HG-induced Min6 cells), inhibitor NC group (inhibitor-NC was transfected into HG-induced Min6 cells), miR-124 inhibitor + si-EZH2 group (miR-124 inhibitor and si-EZH2 were co-transfected into HG-induced Min6 cells), and a miR-124 inhibitor + si-NC group (miR-124 inhibitor and si-NC were co-transfected into HG-induced Min6 cells). The cells at logarithmic phase were seeded into a 6-well plate. When the cells reached 70% confluence, the cells were transfected according to the instructions of Lipofectamine 2000. After transfection for 24 h, the following experiments were conducted.
+ Open protocol
+ Expand
4

Targeting HOXA-AS2, EZH2, and RND3 in Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Small interference RNAs (siRNAs) oligos targeting HOXA-AS2 (si-HOXA-AS2), EZH2 (si-EZH2), or RND3 (si-RND3), and respective non-targeting sequences (si-NC) were purchased from GenePharma (Shanghai, China). Interference sequences were listed as below: si-NC, 5ʹ-UUCUCCGAACGUGUCACGUTT-3ʹ; si-HOXA-AS2, 5ʹ-GAGUUCAGCUCAAGUUGAACAUACA-3ʹ; si-EZH2, 5ʹ-GTGCCCTTGTGTGATAGCACAA-3ʹ; si-RND3, 5ʹ-CCCUGAUUCGGAUGCUGUGCUGAUU-3ʹ. To achieve the overexpression of HOXA-AS2 or RND3, the full length sequences of HOXA-AS2 or RND3 were amplified from human cDNA and cloned into pcDNA3.1 vector (Invitrogen). When cells reached at approximately 80% confluency, transfection was performed using Lipofectamine 2000 reagent (Invitrogen). After 48 h, transfection efficiency was examined using qRT-PCR.
+ Open protocol
+ Expand
5

Targeting CASC15, EZH2, and PDCD4 in Melanoma

Check if the same lab product or an alternative is used in the 5 most similar protocols
Small interference RNAs (siRNAs) specifically targeting CASC15 (si-CASC15#1, si-CASC15#2), siRNA specifically against EZH2 (si-EZH2), siRNA specifically targeting PDCD4 (si-PDCD4), and scrambled oligonucleotides used as negative control (si-con) were chemically synthesized by GenePharma (Shanghai, China). To overexpress CASC15 or programmed cell death 4 (PDCD4), the full length cDNA sequences of CASC15 or PDCD4 were amplified and inserted into pcDNA3.1 vector (Invitrogen), named as pcDNA-CASC15 and pcDNA-PDCD4. Lipofectamine 2000 (Invitrogen) was used to transfect oligonucleotides and constructs into melanoma cells according to the manufacturer’s instruction.
+ Open protocol
+ Expand
6

Ectopic Expression and Knockdown of Regulators

Check if the same lab product or an alternative is used in the 5 most similar protocols
Empty pcDNA3.1 vector (Vector), pcDNA3.1-FBXO32 (FBXO32), siRNA against EZH2 (si-EZH2) or FBXO32 (si-FBXO32) and their negative control (si-con) were designed and synthesized by Genepharma (Shanghai, People’s Republic of China). All cell transfections were performed using the Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s protocol.
+ Open protocol
+ Expand
7

FOXF1 and PVT1 Regulation in Breast Cancer

Check if the same lab product or an alternative is used in the 5 most similar protocols
The full length fragments of FOXF1 coding sequences and PVT1 gene sequences were amplified by PCR and constructed into pcDNA3.1 vector (Invitrogen) to generate pcDNA-FOXF1 and pcDNA-PVT1 (PVT1) plasmid. Small interference RNAs (siRNAs) of PVT1 (si-PVT1#1, si-PVT1#2, si-PVT1#3), FOXF1 (si-FOXF1) and EZH2 (si-EZH2) along with the scramble control (si-con) were synthesized by GenePharma Co., Ltd (Shanghai, China). All these siRNAs or plasmids were transfected into breast cancer cells using lipofectamine 2000 reagent (Invitrogen) following the manufacturer's protocol. EZH2 inhibitor EPZ005687 was purchased from Apexbio Co. ltd (Boston, MA, USA) and dissolved in dimethyl sulfoxide (DMSO, Sigma-aldrich).
+ Open protocol
+ Expand
8

Overexpression and Knockdown of GAS5, EZH2, and PTEN

Check if the same lab product or an alternative is used in the 5 most similar protocols
The empty vector pcDNA3.1 (Vector) or GAS5 overexpressing vector pcDNA3.1-HOXD-AS1 (pcDNA-GAS5) and small interfering RNAs against GAS5 (si-HOXD-AS1), EZH2 (si-EZH2) or PTEN (si-PTEN) or their scramble negative siRNA (si-con) were obtained from Genepharma (Shanghai, China). The Lipofectamine 2000 (Invitrogen) was used to perform cell transfections.
+ Open protocol
+ Expand
9

DANCR, EZH2, and PTEN Silencing in Cancer Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Specific small interfering RNA (siRNA) targeting DANCR (si-DANCR), targeting EZH2 (si-EZH2), targeting PTEN (si-PTEN) and scrambled negative control (si-NC) were purchased from GenePharma (Shanghai, China) and the sequences are presented in Table 1. To construct DANCR overexpression plasmid (pcDNA-DANCR), PCR was performed with complementary DNA (cDNA) from SUNE-1 cells as the template. Plasmid (500 ng) or siRNAs (50 nM) were transfected into SUNE-1 cells and 5–8F cells using Lipofectamine® 2000 (Invitrogen) in line with the manufacturers’ instruction.
+ Open protocol
+ Expand
10

Overexpression and Silencing of Key Regulators

Check if the same lab product or an alternative is used in the 5 most similar protocols
The full-length of mouse HBx and SLC7A11 were cloned into pcDNA3.1 vector (GenePharma, Shanghai, China). Vector alone served as a negative control. Si-NC and si-EZH2 were purchased from GenePharma. Lentiviral transduction or siRNA transfection was conducted using Lipofectamine 3000 transfection reagent (Invitrogen). Cells were treated with erastin (10 μM, Sigma-Aldrich, St Louis, MO, USA), Fer-1 (1 μM, Sigma-Aldrich), GSK126 (5 μM, Selleckchem, Houston, TX, USA) or CHX (50 μg/ml, Sigma-Aldrich).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!