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Lipopolysaccharide

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Lipopolysaccharide is a complex molecule found in the outer membrane of Gram-negative bacteria. It is a key structural component of the bacterial cell wall and plays a crucial role in the interaction between bacteria and their host environments.

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576 protocols using lipopolysaccharide

1

Endothelial Cell Lipopolysaccharide Response

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HUVECs were cultured in Endothelial Cell Medium (Science Cell). HEK-293FT cells were cultured with DMEM (Gibco) supplemented with 10% FBS (Gibco). All cell lines were incubated at 37 °C and 5% CO2 in a humidified atmosphere. For lipopolysaccharide experiments, HUVECs were stimulated by 1 µg/mL lipopolysaccharide (Sigma) as previously described.20 (link),21 (link) After 4 hours, the cells were collected and assayed.
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2

M1 Macrophage Polarization and LDL Stimulation

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To M1 macrophage polarization, monocytes culture medium was removed and replaced with RPMI + L-Glutamine medium (Gibco, 21127, MA, USA) with 10% Fetal Bovine Serum (ATCC, 30-2020, VA, USA), 1% antibiotic (Pen Strp. Gibco15140, MA, USA), supplementing with interferon-gamma (INFɣ) 20 ng/mL (Millipore, IF002, MA, USA) lipopolysaccharide 100 ng/mL (Sigma, L4391-1 MG, MA, USA) maintaining the standard conditions of 36.5 °C and 5% CO2 for 24 h.
M1 macrophages were further stimulated with a single dose of LDL (10 µg/mL) and the transcriptome was evaluated at different times (0, 24, 48, and 72 h) in each study group. RPMI 1640 supplemented with 5% FBS, and IFN-γ (20 ng/mL) lipopolysaccharide 100 ng/mL (Sigma, L4391-1MG, MA, USA) maintaining the standard conditions of 36.5 °C and 5% CO2. The confluence in each technical replicate was 200,000 cells per well and they were performed in triplicate for each volunteer. Cell counts were performed using the TC20™ automated cell counter (Bio-Rad, 145-0102, CA, USA).
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3

LFA-1/ICAM Blocking in CD4+ T-B Cell Co-culture

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CD4+ T cells (1 × 105, 100 μL) were co-cultured with autologous B cells (4 × 105, 100 μL) in U-bottom 96 well plates (5 × 105, 200 μL volume/well) as described previously [46 (link)]. Anti-CD11a mAb, 1 μg/mL, or mouse isotype control IgG1 was used to observe the LFA-1/ICAM blocking role when CD4+ T cells and B cells were incubating. B cells alone, B cells plus lipopolysaccharide (Sigma, St Louis, MO, USA), and B cells plus lipopolysaccharide and anti-CD11a were cultured as controls. After incubation in RPMI 1640/10% FBS/penicillin/streptomycin at 37°C/5% CO2 for 8 days, 50 μL fresh media was added to each well. On the fourth day after that, supernatants (200 μL) were harvested and stored at 4°C.
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4

Engulfment of shRNA/Yeast Microcapsules by Macrophages

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RAW264.7 was used to prove shRNA/yeast microcapsule can be engulfed by macrophages. RAW264.7 was cultured in DMEM (ATCC, 30-2002, Manassas, VA, USA) containing 10% FBS and 100 ng/mL lipopolysaccharide (Sigma, L2880, Shanghai, China) for 24 h. Then 105/6-well IL-1β shRNA/yeast microcapsule (three different IL-1β shRNA/yeast were mixed 1:1:1) and control shRNA/yeast was separately added into the lipopolysaccharide induced macrophages. After incubated for 4 h, a large number of IL-1β shRNA/yeast microcapsules were engulfed by macrophages. After 24 h treatment, the gene expression of IL-1β and TNF-α was quantified by RT-qPCR (Primers were showed in Table 1).
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5

Preparation and Culture of MEFs and HEK293T Cells

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MEFs were prepared as described previously32 (link). The HEK293T cell line and wild-type and p53−/−MEFs were cultured in Dulbecco’s modified Eagle’s medium supplemented with 10% fetal bovine serum (FBS). The following reagents were used for treating cells: cycloheximide (Cat# 06741-04; Nacalai Tesque, Inc., Kyoto, Japan), MG132 (Cat# 474790; Merck KGaA, Darmstadt, Germany), lipopolysaccharide (Cat# L2637; Merck KGaA), TNF-α (Cat# 300-01A; PeproTech, Inc., Rocky Hill, NJ, USA), IL-1β (Cat# 200-01B; PeproTech, Inc.), dichloroacetate (Cat# 347795; Merck KGaA), and 2-deoxy-D-glucose (Cat# D8375; Merck KGaA).
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6

ROCK-II Inhibitor Y-27632 Modulates TLR4 Signaling

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The Rho-associated protein kinase 2 (ROCK-II) inhibitor, Y-27632 (cat. no. 555550; Sigma-Aldrich; Merck KGaA, Darmstadt, Germany), the TLR4 specific agonist lipopolysaccharide (LPS; cat. no. 437628; EMD Millipore, Billerica, MA, USA), CRMP monoclonal antibody (cat. no. ab129082; Abcam, Cambridge, UK) anti-p-CRMP2 polyclonal antibody (cat. no. 9397; Cell Signaling Technology, Inc., Danvers, MA, USA), anti-Rho kinase antibody (cat. no. 9029; Cell Signaling Technology, Inc.), TLR4 monoclonal antibody (cat. no. sc-293072; Santa Cruz Biotechnology, Inc., Dallas, TX, USA), TLR4-neutralizing antibody (cat. no. 16-9917; eBioscience; Thermo Fisher Scientific, Inc., Waltham, MA, USA), and β-actin (cat. no. sc-47778; Santa Cruz Biotechnology, Inc.) were used.
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7

Antibody-Based Cellular Signaling Assays

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Antibodies are depicted in Table 1. Aldosterone, actinomycin D, and 4‐phenylbutyric acid were purchased from Sigma‐Aldrich (St. Louis, MO). Lipopolysaccharide, thapsigargin and tunicamycin were purchased from EMD Millipore (Billerica, MA).
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8

Macrophage Polarization from THP-1 Cells

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THP-1 cells (American Type Culture Collection) were cultured at 37°C with 5% carbon dioxide in Roswell Park Memorial Institute 1640 medium (no. 2187509; Thermo Fisher Scientific) containing 10% fetal bovine serum. To differentiate monocytes into macrophages (M0), cells were incubated for 24 hours with 150 nmol/L phorbol 12-myristate 13-acetate (no. P8139PMA; Sigma/Merck), followed by 24 hours in Roswell Park Memorial Institute 1640 medium. M0 macrophages were consequently incubated with 20 ng/mL inteferon γ (no. PHC4031; Thermo Fisher Scientific) and 10 pg/mL lipopolysaccharide (no. 2630; Merck) for 24 hours, or with 20 ng/mL interleukin 4 (no. 200–04; Peprotech) and 20 ng/mL interleukin 13 (no. 213-ILB; R&D Systems) for 72 hours, for polarization into M1 or M2 macrophages, respectively.
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9

Fibroblast Cell Activation and Inhibition

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HDF was bought from American Type Culture Collection (Cat# PCS-201-012, cell type: fibroblast, origin: human skin) and cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fatal bovine serum at 37°C, 5% CO2 atmosphere (Gusarov et al., 2021 (link)). Lipopolysaccharide (Cat# L4391, e. coli. 0111: B4, Merck, Germany) was used to stimulate HDF in vitro. Taxol (1 μM, Cat# S1150, Selleck, United States) or SB203580 (5 μM, Cat# S1076, Selleck, United States) was used to the culture and pretreated at 37°C for 1 h before LPS stimulation.
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10

Inflammatory Pathway Induction and Analysis

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DMEM, RPMI 1640, and Opti-MEM medium were purchased from Thermo Fisher Scientific (Waltham, MA, USA). Fetal bovine serum, Hoechst 33342, propidiumiodide (PI), penicillin G sodium salt, lipopolysaccharide (LPS), Freund’s complete adjuvant, and chicken type II collagen were obtained from Merck (Darmstadt, Germany). Antibodies against NLRP3, GSDMD, caspase-1, NF-κB, and p-NF-κB were obtained from Cell Signaling Technology (Danvers, MA, USA). Antibodies against Tubulin, STING, p-STING, F4/80, and γ-H2AX were obtained From Abcam (Cambridge, United Kingdom). Mouse IL-1β and IL-18 uncoated ELISA kits were purchased from Thermos Fisher Scientific (Waltham, MA, USA). Lactate dehydrogenase (LDH) assay kits were obtained from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). TRIzol reagent, PrimeScript RT Reagent Kit with gDNA Eraser, Effectene Transfection Reagent, and SYBR Premix Ex TaqII were obtained from Vazyme (Nanjing, China). CCCP and JSH-23 were purchased from MCE (New Jersey, USA). Human or mouse PBMC separation medium were obtained from Solarbio (Beijing, China).
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