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Gateway cloning kit

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Gateway cloning kit is a molecular biology tool designed for efficient and reliable DNA cloning. It provides a standardized system for the transfer of DNA sequences between different vectors, enabling researchers to easily move genes or other DNA fragments of interest into a variety of expression and analysis platforms.

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25 protocols using gateway cloning kit

1

Cloning and Mutagenesis of Human CYP1B1

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The wild-type human CYP1B1 cDNA was purchased from Open Biosystems, and was cloned in a pDONR201vector using the Gateway Cloning kit (Invitrogen). An attB-flanked PCR product of CYP1B1 cDNA was cloned into the pDONR201 entry vector and then transferred into destination vector pSD-69 using the Gateway Cloning kit (Invitrogen). The pSD-69 plasmid contains the human phosphoglycerate kinase (PGK) promoter, a Gateway attR cassette (Invitrogen), the mouse PGK promoter and the puromycin acetyltransferase gene cloned into pRRLhPGK.GFP.SIN18.14 (link) The variant cDNA was obtained by site-directed mutagenesis through replacement of G1697 by C1697, using the Site-Directed Mutagenesis kit (Stratagene). Constructions were verified by sequencing, and nucleotide replacement was checked by pyrosequencing. The pER51CYP1B1-WT (G allele: WT) and pER51CYP1B1-VAR (C allele: VAR) plasmid DNAs were then used for the generation of viruses and the infection of cell lines. The tdTomato-CAL27 and -CAL33 isogenic cell lines were produced by transduction of the cells with a second lentivirus carrying the tdTomato reporter gene (PGK-tdTomato), which was a generous gift from Pr François Moreau-Gaudry (University of Bordeaux).
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2

Cloning and Transformation of Trx h2 Gene

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The coding region of Trx h2 gene was amplified using the primers, TRXH2-F_GW (5′-aaaaagcaggctttatgggaggagctttatcaactgtg-3′), TRXH2-R_GW (5′-agaaagctgggtttgctctgagtttgctaactttcttc-3′), attB1 adapter (5′-ggggacaagtttgtacaaaaaagcaggct-3′) and attB2 adapter (5′-ggggaccactttgtacaagaaagctgggt-3′). The DNA fragment was first subcloned into pDONR221 (Invitrogen, ThermoFisher Scientific, Waltham, MA, USA) and then transferred into pJCV52 (VIB, Ghent, Belgium) using a GATEWAY cloning kit (Invitrogen, ThermoFisher Scientific, Waltham, MA, USA). Arabidopsis plants were transformed by following the floral dip method [48 (link)]. The transformed plants were grown on the medium containing 50 mM of kanamycin. The survived plants were used to propagate seeds for the selection of homozygous transgenic lines.
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3

Yeast One-Hybrid Assay for TOC1 Promoter

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The TOC1 promoter was first cloned into the pDONR P4-P1R vector (Invitrogen) through the Gateway BP reaction. The entry clones were recombined into destination vectors pMW#2 (Invitrogen) and pMW#3 (Invitrogen). Mutagenesis of the TOC1 promoter was performed using QuikChange Lighting Multi Site-directed mutagenesis kit (Agilent Technologies) according to the instruction manual. TOC1p_Mut1 (the TOC1 promoter mutated in the 1st TGA-binding site), TOC1p_Mut2 (the TOC1 promoter mutated in the 2nd TGA-binding site) and TOC1p_Mut1+2 (the TOC1 promoter mutated in both TGA-binding sites) were cloned into destination vectors pMW#2 and pMW#3 through the Gateway cloning kit (Invitrogen). The coding sequences of TGAs were cloned into pDONR207 and subsequently transferred into pDEST-AD by the Gateway LR reactions. Transformation of constructs into the yeast strain YM4271 was performed as previously described35 (link). Beta-galactosidase reporter activities were measured using ONPG as the substrate36 (link) and normalized to the control with an empty vector pDEST-AD. All primer sequences used for yeast one-hybrid assay (Y1H) are listed in Extended Data Table 1.
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4

Lentiviral Expression of WDR26 Mutants

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Human WDR26 and mutants were amplified by PCR and cloned into the pSLIK lentiviral destination vector for Tet-inducible expression, using the Gateway cloning kit (Invitrogen) [19 (link)]. Lentivirus was generated as described previously [19 (link)].
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5

Tobacco Transformation Using PJAM1502 Vector

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The construct used for plant transformation was based on the binary vector PJAM1502, which contains a double 35 s promoter [38 (link)]. The construct PJAM1502:LrAN2 and PJAM1502:LbAN2 was based on the Gateway Cloning Kit (Invitrogen, USA). Binary vectors were electroporated into Agrobacterium tumefaciens strain GV3101. The leaf disc transformation method was used for tobacco transformation [39 (link)]. The selective medium of transgenic shoots contained 0.7% (w/v) agar, 3% (w/v) sucrose, 1.0 mg/L 1-Naphthaleneacetic acid (NAA), 1.0 mg/L 6-benzylaminopurine (BAP), 150 mg/L kanamycin, and 300 mg/L Timentin (ticarcillin disodium and clavulanate potassium). The transgenic shoots grow up in the greenhouse with long-day lighting (16 h light/8 h dark) after 1 month. For further experiments, the T3 family lines carrying objective gene without the separation were used.
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6

Gateway Cloning-Based Construct Generation

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The constructs were produced using the Gateway cloning kit (Invitrogen, Carlsbad, CA, USA, http://www.lifetechnologies.com) following the manufacturers instructions. In brief, PCR products were amplified using gene-specific primers for each construct flanked by the attB1 and attB2 universal primers (Supplementary Table 1). The PCR products were cloned into the pDONR207 vector using BP clonase and then they were re-cloned into the pSITE:GFP destination vector58 (link)59 (link) or the pTA7001destination vector40 (link), using LR clonase. To construct the localization mutants, the NLS from SV40 (PKKKRKV) and the consensus NES (NELALKLAGLDINK) sequence were added in the primers31 (link)32 (link).
The TuMV/GFP:NIa-Pro construct was created by amplifying a PCR product with pSITE:GFP:NIa-Pro as the template using oligonucleotides containing a SacII restriction site (SacII-eGFP-F and NIa-Pro-SacII-R; Supplementary Table 1). The PCR product was digested with the SacII restriction endonuclease and inserted into the corresponding restriction endonuclease site in TuMV/6K2:GFP after removal of 6K2:GFP and dephosphorylation33 (link)60 (link).
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7

Molecular Cloning for Protein Purification

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Expression plasmid constructs used in protein purification were generated by PCR amplification of the FERM domain of human MSN (residues 1–345) from the Mammalian Gene Collection cDNA library (IMAGE:4908580). The PCR product was cloned into the E. coli expression vector pNIC28-Bsa4 using ligation independent cloning, giving rise to an N-terminal fusion with a 6His tag and a TEV protease cleavage site (MSNA-c001). Constructs for purification of MSN-H288A (MSNA-c028), MSN-L281R (MSNA-c025), and the MSN-H288A, -L281R (MSNA-c033) were produced by site-directed mutagenesis, using the KLD enzyme kit (NEB, M0554S). Full-length Venus-Flag-tagged CD44 and GST-tagged MSN for mammalian expression were generated using Gateway© cloning kit (Invitrogen). The vector backbones are pDEST27 vector (Invitrogen) for GST-tagged MSN and lab customized pSCM167 for Venus-Flag-tagged CD44. For NanoBiT split luciferase assay, BiBiT Flexi vectors were custom ordered from Promega.
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8

Tobacco Transformation with HtMYB2 Overexpression

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The overexpression vector for tobacco transformation was based on the pJAM1502 binary vector, which contains a double CaMV35S promoter [31 (link)]. The pJAM1502: HtMYB2 construct was achieved using the Gateway cloning Kit (Invitrogen, Carlsbad, CA, USA). Binary vectors were electroporated into Agrobacterium tumefaciens strain GV3101. Tobacco (Nicotiana tabacum) transformation was carried out using a leaf disc transformation method [32 (link)]. Transgenic shoots were grown on selective medium containing 3% (w/v) sucrose, 0.7% (w/v) MS (Murashige and Skoog), 0.7% (w/v) agar, 1.0 mg/mL 6-benzylaminopurine(6-BA), 1.0 mg/mL 1-naphthaleneacetic acid(NAA), 300 mg/L Hygromycin and 150 mg/L kanamycin. These transgenic shoots were transferred to the greenhouse under long-day light conditions (16 h light/8 h dark) after 1 month. Significant differences were determined using analysis of variance (ANOVA) and Tukey’s honestly significant difference (HSD) test, where P < 0.05 was considered to be significant. All data were analyzed using SPSS software (IBM, USA).
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9

Yeast Two-Hybrid Screening for LRGUK Binding Partners

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The adult mouse testis cDNA library (pDEST22 prey vector) used for yeast two hybrid screen was as described previously [51 (link)]. The full length Lrguk-1WT and LrgukKaos cDNAs were cloned into pDEST32 vector using the Gateway cloning kit (Invitrogen). For the initial identification of LRGUK binding partners, the LRGUKWT-pDEST32 vector was used as bait in a yeast two hybrid screen with the ProQuest Two-Hybrid System (Invitrogen). Briefly, the LRGUKWT-pDEST32 vector and pDEST22 testis cDNA library constructs were co-transformed into Mav203 yeast strain. Putative interacting clones were isolated from the resulting yeast colonies and re-transformed into E. coli to obtain high purity plasmids for sequencing cDNA inserts. Sequencing of the longest HOOK2 clone revealed an open reading frame of 1078 bp that corresponded to the C-terminal amino acids 369–716 of the HOOK2 protein. To determine the effect of the LRGUKKaos mutation on the binding to HOOK2, the identified HOOK2-pDEST22 prey vector was co-transformed into the Mav203 yeast strain along with either LRGUKKaos-pDEST32, LRGUKWT-pDEST32 or pDEST32 empty vector only and plated on selection media.
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10

Overexpression of LrAN2 Enhances Anthocyanin Content in Tobacco

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The MYB transcription factor LrAN2 was first reported by our laboratory. It expressed only in the black fruit of Lycium ruthenicum Murry and the allele variation of LrAN2 is strictly related to the black fruit trait [23 (link)]. In this study, LrAN2 was transformed into tobacco Samsun to obtain transgenic lines with high anthocyanin content. The vector PJAM1502 with a double 35 s promoter was used for the transformation. The construct PJAM1502:LrAN2 was established using a Gateway Cloning Kit (Invitrogen, Carlsbad, CA, USA). The freeze-melt method was employed to transform the binary vectors into Agrobacterium tumefaciens strain GV3101. The leaf disc transformation method was used for the tobacco transformation [31 (link)]. Regeneration tissues were grown on selective media (0.7% (w/v) agar, 3% (w/v) sucrose, 1.0 mg/L 1-naphthaleneacetic acid (NAA), 1.0 mg/L 6-benzylaminopurine (6-BA), and 150 mg/L kanamycin. The positive shoots were planted in the greenhouse under long-day lighting (16 h light/8 h dark). Though 23 positive lines were obtained, only three T3 family lines carrying the objective gene without segregation of character were selected for further experiments.
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