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24 protocols using magellan v7

1

Quantifying Mouse Cytokines by ELISA

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The levels of mouse IL-5 and IL-13 were measured by sandwich ELISA. 96 Well EIA/RIA Plates (Corning, NY, USA) and DuoSet® ELISA Development Systems (R&D Systems, Minneapolis, MN, USA) were used according to the manufacturers’ instructions. Results were read at an optical density of 450 nm by using a Sunrise™ microplate reader and Magellan V7.2 software (Tecan, Männedorf, Switzerland).
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2

ORAC Antioxidant Capacity Assay

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For ORAC the method of Davalos et al. [82 (link)] was used. Extracts were diluted with 75 mM phosphate buffer (pH 7.4). The assay was carried out in black-walled 96-well plates (Greiner-Bio One) and each well contained a final volume of 200 μL. To each well 20 μL of extract and 120 μL of fluorescein (FL; 70 nM final concentration) were added and the plate was incubated at 37 °C for 15 min. The AAPH (60 μL; 12 mM final concentration) was added to each well and fluorescence intensity was estimated using an Infinite200 Pro plate reader (Tecan, Männedorf, Switzerland), every minute for a total of 80 min using an excitation wavelength of 485/9 nm and an emission wavelength of 535/20 nm. A standard curve was constructed using 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (Trolox, Sigma-Aldrich, Oakville, ON, Canada, 1.5–10.5 μM). A blank (fluorescein + AAPH) using phosphate buffer instead of the antioxidant solution was carried out in each assay. Results were determined by using Magellan v 7.2 software (Tecan, Männedorf, Switzerland), on the basis of the difference in area under the curve between the control and the sample and expressed as μmoles of Trolox equivalents (TE) per g of lipidic extract. All the reaction mixtures were prepared in triplicate and at least three independent assays were performed for each sample.
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3

TEAC Assay for Antioxidant Capacity

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The TEAC assay was performed adapting the method described by Re et al. [100 (link)] to a microplate reader. 2,2′-Azinobis (3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt (ABTS, Sigma-Aldrich, Oakville, ON, Canada) radical cations were prepared by mixing potassium persulfate 2.45 mM (final concentration) and an aqueous solution of ABTS 7 mM (final concentration) in the dark at room temperature for 12–16 h. The ABTS radical cation solution was diluted in PBS (pH 7.4) to an absorbance of 0.40 at 734 nm ± 0.02. A standard calibration curve of Trolox (0–16 μM) was constructed. A volume of 10 μL of Trolox or extracts diluted in PBS were added in the wells of a 96 well-plate (Costar, MERCK, Darmstadt, Germany) with 200 μL of diluted ABTS. Afterwards the absorbance reading at 734 nm was taken 6 min after initial mixing using an Infinite200 Pro plate reader (Tecan, Männedorf, Swizerland). Appropriate solvent blanks were run in each plate. The lipidic extract was assayed in at least three separate dilutions and in triplicate. The inhibition of absorbance at 734 nm of the lipidic extract was plotted as a function of concentration of Trolox and the TEAC value expressed as Trolox equivalent (in micromolar) per g of lipidic extract, using Magellan v 7.2 software (Tecan, Männedorf, Switzerland).
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4

TEAC Assay for Pomace Extracts

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The TEAC assay of whole and skin pomace samples was performed trough the method reported by Gerardi et al. [8 (link)]. The ABTS radical, diluted in PBS (pH 7.4), showed an absorbance value of 0.4 (read at 734 nm). A volume of 200 μL of diluted ABTS was added to 10 μL of extract. Then, the absorbance value was recorder at 734 nm after 6 min using a plate reader (Infinite 200 Pro, Tecan, Männedorf, Switzerland). TEAC values were obtained considering the percentage inhibition at 734 nm with Trolox as standard. TEAC values were expressed as Trolox equivalents (μmol/g) using Magellan v7.2 software (Tecan, Männedorf, Switzerland )).
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5

Bacterial Growth Kinetics and MIC Determination

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Overnight cultures of bacterial isolates in LB were adjusted to 0.1 OD600 and diluted 1000-fold, and 100 μl of each isolate dilution were transferred in triplicates in a 96-well plate with a flat bottom (Nunc, Thermo Fisher Scientific), which were incubated in Infinite F200 Pro plate reader (Tecan) with lid on, at 37°C and shaken at 225 rpm for 24 h. Absorbance (OD600 nm) was measured using Magellan V 7.2 software, every 20 min during 24 h incubation. Growth curves were constructed and were used to calculate the growth rate and lag phase using the Gompertz model. For MICs determination, the overnight cultures were diluted 10 000 fold and 1 ml of the diluted culture was poured onto a blood agar plate, the excess liquid was discarded, and the plates were allowed to dry and E-test strips (bioMérieux SA, France) were fixed in the middle of each plate and were incubated overnight in 37°C.
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6

Cytotoxicity Evaluation by LDH Assay

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Cell viability was monitored with the lactate dehydrogenase (LDH) release assay using the CytoTox96® non-radioactive cytotoxicity kit (Promega, Stockholm, Sweden), as previously described [16 (link)]. The samples were analyzed using the Tecan Infinite® F200 plate reader operating with Magellan v7.2 software (Männedorf, Switzerland). The percentage of cell viability was calculated based on the ratio between the absorbance of each sample and the negative control sample.
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7

Antioxidant Capacity Evaluation of Mucus Samples

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For ORAC the method of Davalos et al. [74 (link)] was used; mucus (three replicates for each of the five samples) was diluted with 75 mM phosphate buffer (pH 7.4). The assay was carried out in 96-well plates (Greiner-Bio One, Frickenhausen, Germany) using an Infinite200Pro plate reader (Tecan, Männedorf, Switzerland). To each well 20 µL of samples and 120 µL of fluorescein (FL; 70 nM final concentration) were added, and the plate was incubated at 37 °C for 15 min. Finally, the AAPH (60 µL; 12 mM final concentration) was added to each well and fluorescence intensity was estimated every minute for 80 min using an excitation wavelength of 485 nm and an emission wavelength of 535 nm. A standard curve was constructed using 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (Trolox, Sigma-Aldrich,1.5–10.5 µM). A blank (fluorescein + AAPH) using phosphate buffer instead of the sample was carried out in each assay. Results were determined computing the difference in area under the curve between the control and the sample by using Magellan v7.2 software (Tecan, Switzerland) and expressing the result as nmoles of Trolox equivalents (TE) per mL of mucus. All the reaction mixtures were prepared in triplicate and at least three independent assays were performed for each sample.
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8

Quantifying Nitric Oxide in Macrophages

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NO production in macrophages was determined by the DAF-FM-DA assay (Sigma-Aldrich, Stockholm) as described previously. 21 N-Omega-nitro-L-arginine methyl ester hydrochloride (L-NAME, 15 mM; Sigma-Aldrich) was used to inhibit NO production. Briefly, cells were washed with PBS at 24 h, 48 h and 72 h post-addition of polarization stimuli and incubated with DAF-FM-DA (10 µM) for 60 min. Then, cells were washed with PBS to remove excess probe and incubated for 30 min to allow complete de-esterification. The fluorescence signal was captured at the excitation and emission wavelengths of 495 and 515 nm using a Tecan Infinite® F200 plate reader (Männedorf, Switzerland) operating with Magellan™ v7.2 software (Tecan). The fluorescent images were captured using the ZOE Fluorescent Cell Imager (BioRad, Sweden).
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9

Quantifying Bacillus Growth Kinetics

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RPMI 1640 medium was inoculated with either B. amyloliquefaciens CECT 5940 (BA) or B. subtilis DSM 32315 (BS) and bacteria were cultured overnight at 37 °C and 120 rpm. To define the actual colony forming units per milliliter (cfu/mL), the bacterial growth was measured on a Tecan Infinite® M200 Pro plate reader with Magellan™ v. 7.1 software (Tecan Group AG, Männedorf, Switzerland) and bacterial cultures were plated on tryptic-soy agar (TSA, Carl Roth) on Petri dishes (Greiner Bio-One, Frickenhausen, Germany) and counted the next day.
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10

cAMP Quantification Using Microplate Reader

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Intracellular cAMP levels were determined using the cAMP parameter assay kit from R&D systems according to the manufacturer's instructions using Infinite M200 Pro microplate reader (Tecan Group AG) and Magellan V7.1 software (Tecan Group AG).
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