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4 protocols using tobramycin

1

Effects of Topical Antibiotics on BMSC Osteogenesis

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Human BMSCs were purchased from Cyagen (USA) and cultured in human BMSCs basal media (Cyagen, USA) with 10% fetal bovine serum (Cyagen, USA), 1% penicillin-streptomycin (Cyagen, USA), and glutamine (Cyagen, CA, USA). And osteogenic induction was conducted by BMSCs osteogenic differentiation media (Cyagen, USA) with 10% fetal bovine serum (Cyagen, USA), glutamine (Cyagen, CA, USA), 1% penicillin-streptomycin (Cyagen, USA), ascorbic acid (Cyagen, CA, USA), β-Glycerolphosphate disodium (Cyagen, USA), and dexamethasone (Cyagen, USA). All the cells were cultured at 37°C in saturated humidity containing 5% CO2. The media were changed every two days. The BMSCs were digested using 0.25% trypsin (Solarbio, China), when they grew to a confluence of 70–80%. To investigate the effect of topical antibiotics, BMSCs were cultured without antibiotics (Con group) or with antibiotics, which further subdivided into three subgroups: Van group: cultured with vancomycin (Solarbio, China), (1g per person11 (link),12 (link) = 14.28μg/mL), Tob group: cultured with tobramycin (Solarbio, China), (2g per person3 (link),13 (link)=28.57μg/mL), Van+Tob group (vancomycin 14.28μg/mL combined with tobramycin 28.57μg/mL).
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2

DHA27 Synthesis and Cytokine Analysis

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DHA27 was synthesized by College of Pharmacy, Zunyi Medical University and College of Pharmacy, Army Medical University (the Third Military Medical University) (Song et al., 2016 (link)). Gentamicin, tobramycin (TOB), and amikacin were purchased from Beijing Solarbio Science & Technology Co., Ltd. whereas daunorubicin (DNR) was purchased from Med Chem Express (USA). RNA iso Plus and Reverse Transcription Kit were purchased from TaKaRa (Japan). Primer design and synthesis were performed by Sangon Biotech (Shanghai) Co., Ltd. Interleukin (IL)-1β (mouse) and interferon (IFN)-γ (mouse) ELISA kits were purchased from Thermo Fisher Scientific (USA).
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Evaluating Antibacterial and Cytotoxic Effects

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Linolenic acid (Sigma-Aldrich), Azocasein (Sigma-Aldrich), AlarmaBlue cell viability assay kit (KeyGen BioTECH, China), Tobramycin (Solarbio, China), Crystal violet (Solarbio, China), LIVE/DEAD BacLight Bacterial viability kit (Molecular Probes, USA), Biozol Total RNA extraction reagent (BioFlux, China), TransScript Green Two-Step qRT-PCR SuperMix kit (Transgen Biotech, China), Trans2 K DNA ladder (Transgen Biotech, China), 2X Taq PCR MasterMix (TianGen, China), Ethidium bromide (Sigma, China), Cetrimide agar base (Xiya, China), Dimethyl sulfoxide (AMRESCO, Ohio-USA), and any other reagents were of analytical grade.
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4

Evaluating Selectivity of Pepper-based SAM Sensors

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To test the selectivity of the Pepper-based SAM sensors, Pepper-based SAM sensor RNA (1 μM) was mixed with HBC (10 μM) in the presence of the target (0.1 mM) or its analogs in the buffer. The samples were incubated at 37°C for 1 h. The fluorescence signal of each sample was measured at 37°C using a spectrofluorometer with 505 nm excitation, 545 nm emission, 5 nm slit widths and 0.1 s integration time. Analogs of SAM include SAH (Aladdin S139501), adenosine (Coolaber CA1241) or methionine (Coolaber CM7211). Analogs of tetracycline include doxycycline (Solarbio ID0670), neomycin (Solarbio N8090), tobramycin (Solarbio T8810), gentamycin (Solarbio G8170), ampicillin (Solarbio A1170) and kanamycin (Solarbio K1030). Analogs of guanine including guanosine (MACKLIN G810366) and adenine (BBI A600013-0025) were used in guanine sensor selectivity measurement. Bovine serum albumin (BSA; Cusabio NP009501B), lysozyme (Cusabio NP004301C) and ovalbumin (Cusabio NP004201C) was used in streptavidin sensor selectivity measurement.
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