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84 protocols using 2 mercaptoethanol

1

SARS-CoV-2 Protein Detection by Western Blotting

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Western blotting targeting the S1 subunit of the S protein, the S2 subunit of the S protein, or the N protein was performed as previously described [32 (link)]. Briefly, SARS-CoV-2 solution (~7.0 log10 TCID50/mL), or each recombinant viral protein, was mixed with an equal volume of dextrin or TY-1. The final concentrations of dextrin and TY-1 in the mixture were 2.5 and 5.0 mg/mL, respectively. The final concentration of recombinant proteins in the mixture was 10 μg/mL. These mixtures were combined with sodium dodecyl sulfate (SDS) buffer with 2-mercaptoethanol (FUJIFILM Wako Pure Chemical Co., Ltd., Osaka, Japan) either immediately (0-h reaction time) or were incubated at 25 °C for 24 h prior to adding the SDS buffer (24-h reaction time). These samples were subjected to SDS–polyacrylamide gel electrophoresis using Mini-PROTEAN® 3 Cell (Bio-Rad Laboratories Inc., Hercules, CA) and Power PACTM HC power supply (Bio-Rad Laboratories Inc.), and western blotting using Power PACTM HC power supply and Luminescent Image Analyzer LAS-3000 (FUJIFILM Co. Ltd., Tokyo, Japan) to detect the S1 subunit of the S protein, the S2 subunit of the S protein, and the N protein.
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2

SARS-CoV-2 Protein Interaction with CuI

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WB was performed as we described previously (22 (link)). Briefly, the SARS-CoV-2-containing VGM or 40 μg/ml of the recombinant protein (SARS-CoV-2 S protein S1 subunit, S protein S2 subunit, or N protein) was mixed with an equal volume of the CuI dispersion or UPW. The CuI concentrations in the mixture were 0.38 and 3.8 mg/ml or 0 mg/ml (UPW group). At that time, 1.2 mg/ml NAC (Fujifilm Wako Pure Chemical Co.) was added to some mixtures to scavenge ROS. These mixtures were combined with sodium dodecyl sulfate (SDS) buffer with 2-mercaptoethanol (Fujifilm Wako Pure Chemical Co.) either immediately (0 h reaction time) or were agitated for 1.5, 3, 6, 12, or 24 h at 22°C to 25°C and 45% to 50% relative humidity prior to adding the SDS buffer (1.5, 3, 6, 12, or 24 h reaction time). The mixed samples were subjected to WB analyses.
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3

Culturing Mouse-Derived Induced Pluripotent Stem Cells

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The miPS cells used in the present study (APS0001; iPS-MEF-Ng-20D-17 mouse-induced pluripotent stem cell line) were purchased from RIKEN BRC (Ibaraki, Japan) [22 (link)]. The cells were incubated with inactivated murine embryonic fibroblast (MEF) feeder cells in Dulbecco’s Modified Eagle’s Medium (DMEM; Invitrogen, Carlsbad, CA, USA) supplemented with 15% KnockOut™ Serum Replacement (Invitrogen), 1% nonessential amino acids (Chemicon, Temecula, CA, USA), 1% l-glutamine (Chemicon), 1000 U/mL penicillin–streptomycin (P/S; Invitrogen), and 0.11 mM 2-mercaptoethanol (Wako Pure Chemical Industries Ltd., Osaka, Japan); 60-mm cell culture plates were used for passaging the cells at a density of 1 × 105 cells/plate. Cells were grown in 5% CO2 at 95% humidity, and the culture medium was changed each day.
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4

Establishment and Characterization of Trophoblast Stem Cells

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TSmole cells were established as described previously (14 (link)). Briefly, CT cells were isolated from CHM tissues and cultured on plates coated with 5–10 µg/mL Col IV (Corning) using TS medium (DMEM/F12 [Wako] supplemented with 0.1 mM 2-mercaptoethanol [Wako], 0.2% FBS [Thermo Fisher Scientific], 0.5% Penicillin-Streptomycin [Thermo Fisher Scientific], 0.3% BSA [Wako], 1% ITS-X supplement [Wako], 1.5 μg/mL l-ascorbic acid [Wako], 50 ng/mL EGF [Wako], 2 μM CHIR99021 [Wako], 0.5 μM A83-01 [Wako], 1 μM SB431542 [Wako], 0.8 mM VPA [Wako], and 5 μM Y27632 [Wako]). TSbip #1, #2, and #3 were established in our previous study (14 (link)) and correspond to TSCT #1, #2, and #3, respectively. TSbip #4 was established in this study and used only for CNV analysis. Unless otherwise noted, we used TSmole and TSbip cells passaged 10–20 times for the analysis.
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5

Stem Cell Culture and Inducible Transgene Expression

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The mouse ES cell line E14-Tg2a and that expressing the syntaxin-4 transgene (ES-STstx4) were cultured in GMEM (Wako) containing 10% FCS (Invitrogen), 1 mM glutamine (Wako), non-essential amino acid (Wako), 0.1 mM 2-mercaptoethanol (Wako), 1 mM pyruvate (Sigma) and LIF (Wako). To maintain stemness, inhibitors of GSK3β/MEK1/2 (2i) (CHIR99021/PD0325901; Invitrogen) dissolved in DMSO were added to the medium at a concentration of 2 μM. The mouse EC cell line F9 (ATCC CRL-1720) and its derivatives (F9-STstx4 and F9-Pcadherin) were maintained in DMEM/HamF12 medium (Wako) supplemented with 10% FCS. The P19CL6 cell line (RIKEN BRL RCB2318) and its derivative (P19-STstx4) were cultured in Alpha modified MEM (αMEM; Wako) with 5% FCS. To induce transgene expression, ES-STstx4, F9-STstx4, F9-Pcadherin, or P19-STstx4 was treated with 5 μg/ml Dox (Sigma-Aldrich) for two or three days. In some cultures, an inhibitor of PI3K (LY294002; Wako) was dissolved in DMSO and added at a concentration of 1.25 or 2.5 μM.
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6

Culturing MLN Cells in RPMI Medium

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MLN cells were cultured in RPMI 1640 complete medium: Roswell Park Memorial Institute (RPMI) 1640 medium (Nacalai Tesque) supplemented with 10% fetal bovine serum (BioWest, Kansas City, KS, USA), antibiotic–antimycotic mixed stock solution (100×) from Nacalai Tesque, and 50 μM 2- mercaptoethanol from Wako (Tokyo, Japan).
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7

Feeder-supported human iPSC culture

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Human iPSCs (line 201B7; Riken Cell Bank, Tsukuba, Japan) were maintained with SNL76/7 feeder cells, clonally derived from a mouse fibroblast STO cell line transformed with neomycin resistance genes and murine LIF genes, in human ES medium (Dulbecco's modified Eagle's medium, nutrient mixture F-12 (DMEM/F-12, Invitrogen, Carlsbad, CA) with 20% knockout serum replacement (Invitrogen) supplemented with 1× non-essential amino acids solution (Chemicon, Temecula, CA), 2 mM l-glutamine (Chemicon), 1 mM 2-mercaptoethanol (Wako Pure Chemical Industries Ltd., Osaka, Japan), 1% penicillin/streptomycin (Invitrogen) and 5 ng ml−1 human fibroblast growth factor (FGF)-2 (ReproCELL Incorporated, Yokohama, Japan)). hMSCs were purchased Lonza (Basel, Switzerland), cultured in BulletKit MSC growth medium (Lonza) and used at passage 3 to 5. The 1,25(OH)2 vitamin D3 was purchased from Kyowa Hakko Kirin Co., Ltd. (Tokyo, Japan). Insulin-like growth factor (IGF)-1 and transforming growth factor (TGF)-β were purchased from Wako Pure Chemical Industries Ltd.
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8

Generating Gorlin Syndrome iPSCs

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To generate Gorlin syndrome iPSCs, we transfected 1 × 105 G-OF cells in 12-well plates with the Sendai virus vector SeVdp(KOSM)302L [20 (link)]. On day 28, the resulting iPSC colonies were selected and plated onto SNL76/7 feeder cells in 24-well plates. These feeder cells had been clonally derived from mouse fibroblast STO cells transformed with neomycin-resistance genes and murine leukemia inhibition factor genes. The iPSCs were maintained with SNL76/7 feeder cells in human ES medium (DMEM supplemented with F-12 nutrient mixture [DMEM/F-12]; Invitrogen) with 20% knockout serum replacement (Invitrogen) supplemented with 1 × nonessential amino acids solution (Chemicon, Temecula, CA), 2 mM L-glutamine (Chemicon), 0.11 mM 2-mercaptoethanol (Wako Pure Chemical Industries Ltd., Osaka, Japan), 1% penicillin/streptomycin (Invitrogen), and 5 ng/ml human basic fibroblast growth factor (bFGF; ReproCELL Inc., Yokohama, Japan). The culture medium was replaced every day until the cells reached confluence.
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9

Culturing Nalm-6 Pre-B Cells

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Nalm-6 cells were cultured in a 5% CO2 incubator at 37 °C in MEM medium (Nissui Seiyaku) supplemented with 10% calf serum (Hyclone), 2 mM MEM non-essential amino acids (Wako Pure Chemical), 1 mM sodium pyruvate (Wako Pure Chemical), 50 μM 2-mercaptoethanol (Wako Pure Chemical) and 0.15 μM Vitamin B12 (Sigma-Aldrich). Nalm-6 is a human pre-B cell line available from ATCC and was kindly provided by Dr Michael R. Lieber. The Nalm-6 cell line was originally established from the peripheral blood of a 19-year-old man with acute lymphoblastic leukaemia59 (link) and has a stable near-diploid karyotype60 (link). All cell lines used in this study are not listed in the database of commonly misidentified cell lines maintained by ICLAC and were tested for mycoplasma contamination using an e-Myco Mycoplasma PCR Detection Kit (iNtRON Biotechnology, Inc.).
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10

Aβ Protein Analysis in Mouse Brain

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On feeding day 58, the mouse brain cortex was homogenized with M-PER (Thermo Fisher Scientific, Waltham, MA, USA) containing 1 × Halt protease and phosphatase inhibitor cocktail (Thermo Fisher Scientific). Samples were mixed with NuPAGE lithium dodecyl sulfate sample buffer (Thermo Fisher Scientific) containing 5% 2-mercaptoethanol (Wako, Osaka, Japan) at 75 °C for 5 min and loaded onto a 14% sodium dodecyl sulfate polyacrylamide gel (SDS–PAGE) (50 µg/lane). After electrophoresis, proteins in the gel were transferred to a nitrocellulose membrane (Bio-Rad, Hercules, CA, USA). After blocking with 0.1% T-TBS containing 5% skim milk (Wako) at room temperature, the membrane was incubated with a mouse monoclonal anti-Aβ antibody (1:1000, clone 6E10, BioLegend, San Diego, CA, USA) or mouse monoclonal anti-GAPDH (1:10000, clone 5A12, Wako) in Can Get Signal solution 1 (Toyobo, Osaka, Japan) overnight at 4 °C. After washing with 0.1% T-TBS, the membrane was incubated with a horseradish peroxidase-conjugated secondary antibody against mouse IgG (1:2000; Cat. No. sc-2005, Santa Cruz) in Can Get Signal Solution 2 (Toyobo) for 2 h at room temperature. After washing, chemiluminescence on the membrane was detected by ECL Prime Western Blotting Detection Reagent (GE Healthcare, Chicago, IL, USA) using an ImageQuant LAS 4000 system (GE Healthcare).
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