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13 protocols using anisomycin

1

Inhibition of Signaling Pathways in Cell Viability Assay

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3-(5′-hydroxymethyl-2′-furyl)-1-benzylindazole (YC-1), sGC inhibitor ODQ, non-competitive selective PDE inhibitor IBMX, and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) were purchased from Sigma-Aldrich (St. Louis, MO, USA). The PKA inhibitor H89 were purchased from Enzo Life Sciences (Farmingdale, NY, USA). The sGC activator BAY 41-2272 and NF-κB inhibitor Ro 106-9920 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The extracellular regulated MAP kinase (ERK) inhibitor U0126, p38 MAP kinases inhibitor SB202190, c-Jun N-terminal kinases (JNK) inhibitor SP600125, HIF-1α inhibitor CAY10585, p38 activator anisomycin, and phosphatidylinositol-3-kinases (PI3K) inhibitor wortmannin were purchased from Cayman Chemical (Ann Arbor, MI, USA).
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2

Amygdalar ASIC1a Modulation in Mice

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For the cannula placement procedure, mice were anesthetized with isoflurane through an anesthetic vaporizer, secured to the stereotaxic instrument, and the cannula made from a 25-gauge needle was inserted bilaterally into LA and basolateral amygdala (relative to bregma: –1.2 mm anteroposterior; ±3.5 mm mediolateral; –4.3 mm dorsoventral) (16 (link), 36 (link)). Dental cement secured the cannula and bone anchor screw in place. Mice recovered for 4–5 days before any subsequent testing was carried out. A 10 μL Hamilton syringe connected to a 30-gauge injector was inserted 1 mm past the cannula tip to inject the selective ASIC1a inhibitor, PcTX-1 (100 nM, Allomone Labs) or anisomycin (62.5 μg/μL, Cayman Chemical). The chemicals were diluted in 1 μL artificial cerebrospinal fluid (ACSF), pH 7.3, and injected over 5 minutes each side. The injection sites were mapped postmortem by sectioning the brain (10 μm coronal) and examining Cresyl violet staining using a Nissl Stain Kit (FD Neuro Technologies). Only animals that had a correctly placed cannula in the amygdala were included in the statistical analysis.
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3

Antibody Validation and Inhibitor Usage

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Commercially available antibodies used in this study are: ROR1, UHRF1 (#4102, #12387, Cell Signaling, Danvers MA), ROR1 (#AF2000, R&D Systems, Minneapolis MN), UHRF1 (#612264, BD Biosciences, San Jose CA), goat IgG serum (#005-000-003, Jackson ImmunoResearch, West Grove PA), mouse IgG serum (#sc-2025, Santa Cruz Biotechnology, Santa Cruz CA), actin, GAPDH, SP1 (#AM4300, #07-645, Millipore, Burlington MA), V5 (#46-0705, Invitrogen, Carlsbad CA), and ubiquitin (#A-104, Boston Biochem, Cambridge MA). The ROR1 antibody has been validated by the manufacturer and we have also tested this antibody in multiple cell lines to correlate immunoblot data with cell lines known to express or not express ROR1 at the transcript level (Supplementary Figure 5). Commercially available inhibitors used in this study are: Velcade (Bortezomib), dasatinib (SelleckChem, Houston TX), anisomycin (Cayman Chemical, Ann Arbor MI), naphthazarin, thymoquinone (Sigma, St. Louis MO), and flavopiridol (LC Laboratories, Woburn MA).
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4

Pharmacological Manipulation of Crickets

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Adult male crickets 1 week after the imaginal molt were used for the pharmacological experiment. Crickets were individually isolated in a 100-ml beaker (ø4.5 cm) for 3 days without food and water before pharmacological treatment. To activate specific intracellular signaling pathways, 200 µM 12-O-tetradecanoylphorbol-13-acetate (TPA; Cayman Chemical; CAS: 16561-29-8), 1 mg/ml anisomycin (Cayman Chemical; CAS: 22862-76-6), 200 µM forskolin (Millipore; CAS: 66575-29-9), 10 mM S-nitroso-N-acetyl-DL-penicillamine (SNAP; Sigma-Aldrich; CAS: 67776-06-1), 200 µM A23187 (Sigma-Aldrich; CAS: 52665-69-7), which dissolved in the cricket physiological saline containing 5% DMSO, were injected. 3 µl of each solution was injected into the head capsule using a 27-gauge needle attached to a 10-μl microsyringe (Hamilton 701 LT Syringe; Sigma-Aldrich).
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5

Antibody Validation and Inhibitor Usage

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Commercially available antibodies used in this study are: ROR1, UHRF1 (#4102, #12387, Cell Signaling, Danvers MA), ROR1 (#AF2000, R&D Systems, Minneapolis MN), UHRF1 (#612264, BD Biosciences, San Jose CA), goat IgG serum (#005-000-003, Jackson ImmunoResearch, West Grove PA), mouse IgG serum (#sc-2025, Santa Cruz Biotechnology, Santa Cruz CA), actin, GAPDH, SP1 (#AM4300, #07-645, Millipore, Burlington MA), V5 (#46-0705, Invitrogen, Carlsbad CA), and ubiquitin (#A-104, Boston Biochem, Cambridge MA). The ROR1 antibody has been validated by the manufacturer and we have also tested this antibody in multiple cell lines to correlate immunoblot data with cell lines known to express or not express ROR1 at the transcript level (Supplementary Figure 5). Commercially available inhibitors used in this study are: Velcade (Bortezomib), dasatinib (SelleckChem, Houston TX), anisomycin (Cayman Chemical, Ann Arbor MI), naphthazarin, thymoquinone (Sigma, St. Louis MO), and flavopiridol (LC Laboratories, Woburn MA).
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6

Rapamycin and Anisomycin Administration

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Rapamycin was administered as previously described (Park et al., 2008 (link)). Rapamycin (LC Laboratories, Woburn, MA) was dissolved at 20 mg/ml in ethanol for stock. Before each administration, Rapamycin was diluted in 5% Tween 80, 5% polyethylene glycol 400 (1.0 mg/ml) in PBS. Rapamycin at 6 mg/kg or the vehicle was injected intraperitoneally once every 2 days after AAV injection. Anisomycin (Cayman Chemical, Ann Arbor, MI) was dissolved in DMSO to prepare a stock solution and diluted in PBS before each administration. Anisomycin (30 mg/kg body weight) or vehicle was injected subcutaneously daily after optic nerve crush. To inhibit OPP incorporation, Anisomycin (50 μg/ml) was injected intravitreally 1 hr before and together with OPP administration.
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7

Differentiation and Stimulation of Bone Marrow-Derived Macrophages

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Primary BMDMs were grown for 6 days in IMDM (12440–053, Gibco) supplemented with 10% FBS (S1620, lot number 221C16, Biowest), 30% L929-conditioned medium and 1% penicillin and streptomycin. BMDMs (1 × 106) were seeded in 12-well cell culture plates (3513, Costar) in DMEM (11995–065, Gibco) supplemented with 10% FBS and 1% penicillin–streptomycin before stimulation with ligands. For infection granulocyte macrophage colony-stimulating factor (GM-CSF)–derived bone marrow cells (denoted as BMDMs) were prepared as previously described and infected with A. fumigatus conidia at a multiplicity of infection (MOI) of 10 for 18 h. For priming, BMDMs were incubated with 100 ng/mL of LPS (tlrl-smlps, Invivogen) for 3 h and washed before infecting with A. fumigatus as described above.
For stimulation with translation inhibitors, BMDMs were incubated with 1 μg/mL of Pam3CSK4 (tlrl-pms, Invivogen) for 4 h, washed, and incubated with 25 μg/mL of anisomycin (11308, Cayman Chemical), 50 μg/mL of cycloheximide (01810, Sigma-Aldrich) or 50 μg/mL of puromycin (ant-pr-1, Invivogen).
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8

Preparation of Kinase Inhibitor Solutions

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Palbociclib Isethionate (Selleckchem) was dissolved in water to 10 mM. Trametinib (Selleckchem), Rapamycin (Alfa Aesar), and SP600125 (ApexBio) were dissolved in DMSO. Human recombinant insulin was purchased from Sigma, PMA (Phorbol-12-Myristate-13-Acetate) was purchased from Acros. Anisomycin was purchased from Cayman Chemical. 3XFLAG peptide was purchased from ApexBio. All reagents were used as received.
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9

Differentiation and Stimulation of Bone Marrow-Derived Macrophages

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Primary BMDMs were grown for 6 days in IMDM (12440–053, Gibco) supplemented with 10% FBS (S1620, lot number 221C16, Biowest), 30% L929-conditioned medium and 1% penicillin and streptomycin. BMDMs (1 × 106) were seeded in 12-well cell culture plates (3513, Costar) in DMEM (11995–065, Gibco) supplemented with 10% FBS and 1% penicillin–streptomycin before stimulation with ligands. For infection granulocyte macrophage colony-stimulating factor (GM-CSF)–derived bone marrow cells (denoted as BMDMs) were prepared as previously described and infected with A. fumigatus conidia at a multiplicity of infection (MOI) of 10 for 18 h. For priming, BMDMs were incubated with 100 ng/mL of LPS (tlrl-smlps, Invivogen) for 3 h and washed before infecting with A. fumigatus as described above.
For stimulation with translation inhibitors, BMDMs were incubated with 1 μg/mL of Pam3CSK4 (tlrl-pms, Invivogen) for 4 h, washed, and incubated with 25 μg/mL of anisomycin (11308, Cayman Chemical), 50 μg/mL of cycloheximide (01810, Sigma-Aldrich) or 50 μg/mL of puromycin (ant-pr-1, Invivogen).
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10

Quantifying Translation Rate in BMDMs

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For translation rate quantification, BMDMs were transfected as described above with GAGs, flagellin or poly(dA:dT) or infected with A. fumigatus. For translation inhibition controls the cells were stimulated with 50 μg/mL anisomycin (Cayman Chemical) or incubated in PBS. Ten min prior to the collection of cell lysates, 10 μg/mL of puromycin (ant-pr, Invivogen) was added. BMDMs were lysed in 1× RIPA buffer and sample loading buffer for immunoblotting analysis.
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