The largest database of trusted experimental protocols

14 protocols using lysing buffer

1

Bovine Neutrophil Phagocytosis Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Bovine polymorphonuclear neutrophils (PMNs) were isolated from blood taken at the jugular vein in sterile evacuated tubes with EDTA. The tubes were centrifuged (1,000 × g for 10 min at 20°C), the plasma, the buffy coat, and the upper third of the red pellet were removed, and the red blood cells of the remaining pellet were lysed with lysing buffer (Sigma). PMNs were washed once with DPBS without Ca and Mg supplemented with RPMI-AH. The cells were adjusted to 2 × 106/ml. Bacteria were grown overnight in BHI broth. They were washed once in DPBSA+ and resuspended in RPMI-AH at a concentration of 2 × 106 CFU/ml. The phagocytic mixture comprised 250 μl of PMN suspension, 50 μl of bacterial suspension, and various amounts of antisera with or without PCCS as a source of complement. The mixture was adjusted to 0.5 ml with RPMI-AH in 1.5-ml Eppendorf tubes. The tubes were secured on a wheel at 37°C for 90 min and rotated (10 revolutions/min). At the end of the incubation, 50 μl of SDS (0.25% in DPBSA+) was added and the tubes were vortexed. After 1/10 dilution in DPBSA+, the CFU were enumerated by spreading 100 μl of the dilution onto TSA plates.
+ Open protocol
+ Expand
2

Splenocyte Isolation and Cytokine Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
To prepare splenocytes, single cell suspensions of spleen were treated with lysing buffer (Sigma-Aldrich).
Splenocyte cultures was performed in a 96-well U-bottom plate (Greiner Bio One, Frickenhausen, Germany) at 37°C with 5% CO2 in GIBCO®RPMI 1640 medium (Thermo Fisher Scientific) supplemented with 10% FBS (NATOCOR, Carlos Paz, Argentina), 1% GIBCO® GlutaMAX, 100 U/ml penicillin, 100 μg/ml streptomycin (all from Thermo Fisher Scientific) and 50 μM 2-mercaptoethanol (Sigma-Aldrich).
To determine IFN-γ concentration in supernatants, splenocytes (1 × 106 cell/well) were stimulated for 72 h at 37°C with SIINFEKL peptide (1 μg/ml) or OVA (100 μg/ml) and IFN-γ measured by ELISA (IFN-γ ELISA MAXTMkit, Biolegend, San Diego, CA, USA). The supernatant IFN-γ concentration was calculated after subtraction of background response (cells incubated with media).
To determine intracellular cytokines, splenocytes (3 × 106 cells/well) were stimulated for 5 h with SIINFEKL peptide (2 μg/ml) in the presence of GolgiStop (0.7 μl/ml) and GolgiPlug (1 μl/ml) (BD Bioscience, San Diego, CA, USA). In some experiments, anti-CD107a (ID4B) antibody was added during the incubation with the peptide/GolgiStop/GolgiPlug mix.
+ Open protocol
+ Expand
3

Splenocyte cytokine and immunoglobulin assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Isolated spleens from individual mice were crushed through a sieve (Corning, Durham, USA) and red blood cells were lysed for 5 min in the dark using lysing buffer (Sigma-Aldrich). Cell suspensions were then centrifuged for 5 min at 2000× rpm using a PRISMR centrifuge (Labnet) and cell numbers in the resulting pellet were counted using a cell counting chamber (VWR, Pennsylvania, USA). 1 × 106 splenocytes were plated/well into 48-well culture plates (Costar, Kennebunk, USA) and left either un-stimulated or re-stimulated with 100 µg/ml of stage-specific parasite extract in a total of 800 µl culture medium (RPMI-1640 containing 10% FCS and 0.4% beta-mecaptoethanol; Sigma-Aldrich) at 37 °C and 5% CO2 for 48 h (cytokines) and 72 h (immunoglobulins). Thereafter, culture supernatants were removed and frozen at − 20 °C until cytokine/chemokine/immunoglobulin levels were determined by Luminex technology.
+ Open protocol
+ Expand
4

Isolation and Culture of Murine Bone Marrow Derived Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Bone marrow derived cells (BMDCs) were isolated from mice (7 wks, male) euthanized by carbon dioxide insufflation and cervical dislocation. Briefly, after bone marrow cells were harvested from femurs and tibiae, red blood cells were lysed using lysing buffer (Sigma-Aldrich) and incubated in RPMI1640 containing 10% heat-inactivated fetal bovine serum (FBS) for 24 h. Non-adherent cells were harvested and centrifuged at 1300 rpm for 10 min, and the cell pellets so obtained were washed twice with PBS and resuspended in RPMI 1640 containing 10% FBS. BMDCs were maintained in RPMI 1640 containing 10% FBS and antibiotic-antimycotic (Life technologies, Carlsbad, CA, USA) at 37°C. Cells (5 × 105/mL) were seeded and cultured for 24 h in complete medium for further experiments.
+ Open protocol
+ Expand
5

Western Blot Analysis of EGF and Connexin 43

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were detached in 1 mM EDTA solution and then added lysing buffer (Sigma–Aldrich). Proteins were boiled for 5 min with β‐mercaptoethanol, and separated by electrophoresis in 10% (wt/vol) SDS‐polyacrylamide gel. Proteins were loaded in each lane and transferred onto polyvinylidene difluoride (PVDF) membrane. The membrane with proteins were incubated with TBST buffer (10 mM Tris /HCl [pH 8.3], 0.05% Tween‐20, and 150 mM NaCl) containing 5% (wt/vol) milk powder for 60 min at room temperature to block nonspecific binding. Membranes with protein were incubated with the primary antibodies, including anti‐mouse EGF monoclonal antibody (D5, sc‐374255, Santa Cruz Biotechnology Inc., CA, USA), anti‐mouse Connexin 43 (Cx43) monoclonal antibody (D7, sc‐13558) at 4°C overnight, and then mouse or goat anti‐mouse IgG‐HRPs (sc‐2005) as the secondary antibody. Revelation was performed with the ECL plus Western blotting detection kit (Amersham Biosciences, Saclay‐Orsay, France), and Chemocapt software using Chemi‐Smart 2000 (Vilber Lourmat, Marne‐la‐Vallée, France) were used for image acquisition.
+ Open protocol
+ Expand
6

ELISPOT Quantification of P. chabaudi-specific ASC

Check if the same lab product or an alternative is used in the 5 most similar protocols
ELISPOTs to measure ex-vivo frequencies of P. chabaudi-specific ASC in BM and MBC in spleen were performed as previously described [61 (link)]. Cells were incubated for 5h on 96-wells Multiscreen-HA filter plates (Millipore) coated with the C-terminal 21kDa part of P. chabaudi merozoite surface protein 1 (MSP121), prepared as described [62 (link)], to measure the frequency of MSP121-specific ASC, or coated with affinity-purified goat anti-mouse IgG (Sigma), to measure the frequency of total IgG ASC. Spots were enumerated with an Immunospot analyzer (CTL, Germany).
For MBC ELISPOTs, spleen cells were obtained by mashing the spleens through a 70 μm filter strainer, and rbc were eliminated by treatment with lysing buffer (Sigma). Cells were polyclonally activated by incubation for 6 days in flat-bottomed 96-well plates in the presence of irradiated feeder splenocytes, LPS, and supernatant from concanavalin A-stimulated C57BL/6 spleen cells. Four-fold dilutions of splenocytes were tested in replicates of 22 wells each. Cells were then transferred to antigen-coated 96-well Multiscreen-HA filter plates (Millipore) for ASC ELISPOT performed as described above. Precursor frequencies were calculated with ELDA software [63 (link)].
+ Open protocol
+ Expand
7

Cell Cycle Analysis by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were seeded in 100 mm dishes at a density of 5 × 105 per dish. Twenty-four hours later, medium was changed and after 48 hours both adherent and floating cells were harvested and lysed for 10 minutes in lysing buffer (0.1% sodium citrate) (Sigma, St Louis, Missouri, USA), 0.1% Triton X-100 (Sigma, St Louis, Missouri, USA), 40 μg/ml Propidium Iodide (Sigma, St Louis, Missouri, USA). Cells were analyzed for DNA content by flow cytometry with FACSCanto Cytofluorometer (BD Pharmingen, San Diego, CA) and the cell-cycle phases were analyzed using FCS Express V3 with MultiCycle AV (http://www.denovosoftware.com). The experiments were performed twice with similar results.
+ Open protocol
+ Expand
8

Spleen Cell Isolation and Culture

Check if the same lab product or an alternative is used in the 5 most similar protocols
Spleens were aseptically removed from 5 mice in the groups treated under late prophylactic regimen, washed with cold PBS, and the tissues were minced. Single-cell suspensions were prepared by passing each spleen through a 70-μm-cell strainer with the end of a 10-mL plastic syringe plunger. Red blood cells in suspension were lysed with Lysing buffer (Sigma Aldrich, Italy). After repeated washes in PBS, the cells were resuspended in triplicate in 96-well plates and 24-well plates (respectively for cell proliferation study and cytokines detection), cultured with RPMI 1640 complete medium, containing 100 U/mL penicillin, 100 μg/mL streptomycin, and 10% fetal bovine serum (FBS). The cells were counted and adjusted to a density of 2 × 106 cells/mL.
+ Open protocol
+ Expand
9

Murine Splenic Cell Isolation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Spleens from mice were collected and macerated using the back of a syringe plunger. Cells were filtered, centrifuged, and incubated for 1 min with 1 mL of lysing buffer (Sigma Aldrich, St. Louis MO, USA). Then, 15ml of RPMI media was added to stop the red blood cells lysis. If lysis is incomplete, incubation with the buffer may be repeated. Finally, cells were centrifuged and diluted for counting and analysis.
+ Open protocol
+ Expand
10

Immunoblot Analysis of STAT1 and p38 MAPK

Check if the same lab product or an alternative is used in the 5 most similar protocols
Dendritic cells were collected and lysed with lysing buffer (Sigma). Protein extracts were separated on 10% polyacrylamide-SDS gels and electroblotted onto nitrocellulose membranes (Gene script). After blocking with 5% nonfat dry milk in TBS, the membranes were incubated with antibodies against STAT1, P38 MAPK, phosphorylated STAT1, and phosphorylated p38 MAPK (Cell Signaling Technology), followed by incubation with HRP-conjugated secondary antibody (Cell Signaling Technology). The blots were normalized to GAPDH.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!